RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 A0A096LPK6 155 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 PER2O15055 1255 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 CREB3O43889 395 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 CEP104O60308 925 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 TOMM40O96008 361 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 ENO3P13929 434 aaPredicted RBP4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 PSMC2P35998 433 aaKnown RBP4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 PPP3CCP48454 512 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 SELENOVP59797 346 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 TDGQ13569 410 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 GPR18Q14330 331 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 HSP90AB4PQ58FF6 505 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 UBAP2Q5T6F2 1119 aaKnown RBP4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 DCAF12L2Q5VW00 463 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 IL20RBQ6UXL0 311 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 TMC8Q8IU68 726 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 BICD2Q8TD16 824 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 ASB5Q8WWX0 329 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 RUFY2Q8WXA3 655 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 HVCN1Q96D96 273 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 EYA3Q99504 573 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 RBM38Q9H0Z9 239 aaKnown RBP4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 KLHL31Q9H511 634 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 NCKIPSDQ9NZQ3 722 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 GTF2A1LQ9UNN4 478 aa4.85□□□□□ -1.63
SMCHD1-204ENST00000581226 C17orf113A0A1B0GUU1 675 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 FAM90A10PA6NDY2 464 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 TNFRSF13BO14836 293 aaPredicted RBP4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 HOXC11O43248 304 aaPredicted RBP4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 SLC25A17O43808 307 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 MMP3P08254 477 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 ARSBP15848 533 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 XBP1P17861 261 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 CDC25AP30304 524 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 GPD2P43304 727 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 GPR12P47775 334 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 ENTPD1P49961 510 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 ARSFP54793 590 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 CDH12P55289 794 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 VAMP2P63027 116 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 MAPK7Q13164 816 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 DUSP6Q16828 381 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 EDRF1Q3B7T1 1238 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 ZNF549Q6P9A3 640 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 PRSS45Q7RTY3 260 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 CHD1LQ86WJ1 897 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 CPXM2Q8N436 756 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 ZNF366Q8N895 744 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 TNIP2Q8NFZ5 429 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 OR4N2Q8NGD1 307 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 RASSF8Q8NHQ8 419 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 LHPPQ9H008 270 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 CATSPERBQ9H7T0 1116 aa4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 WDR6Q9NNW5 1121 aaKnown RBP4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 IFT80Q9P2H3 777 aaPredicted RBP4.84□□□□□ -1.63
SMCHD1-204ENST00000581226 BECN2A8MW95 431 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 EYA2O00167 538 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 OAZ2O95190 189 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 CLDN7O95471 211 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 LINC00205P59089 165 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 ZP1P60852 638 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 HNRNPA0Q13151 305 aaKnown RBP4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 NCAPH2Q6IBW4 605 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 SLC22A25Q6T423 547 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 MON1AQ86VX9 555 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 TMTC1Q8IUR5 882 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 CADM3Q8N126 398 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 ESX1Q8N693 406 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 GDPD5Q8WTR4 605 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 NOC3LQ8WTT2 800 aaKnown RBP4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 SLC35F5Q8WV83 523 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 HTRA1Q92743 480 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 ELP4Q96EB1 424 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 URB1-AS1Q96HZ7 61 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 GFM1Q96RP9 751 aaKnown RBP4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 INTS2Q9H0H0 1204 aaKnown RBP4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 PLAC1Q9HBJ0 212 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 C9orf78Q9NZ63 289 aaPredicted RBP4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 PDP2Q9P2J9 529 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 GJD2Q9UKL4 321 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 INSL5Q9Y5Q6 135 aa4.83□□□□□ -1.64
SMCHD1-204ENST00000581226 GOLGA6L10A0A0M3HER8 536 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 CCDC196A0A1B0GTZ2 297 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 ARHGAP10A1A4S6 786 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 CCDC189A1A4V9 331 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 MS4A18H0YCH9 400 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 I6L893 689 aaPredicted RBP4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 NTN1O95631 604 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 HNRNPA1P09651 372 aaKnown RBP eCLIP4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 KCNJ4P48050 445 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 CDH15P55291 814 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 SLC18A2Q05940 514 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 TRAF1Q13077 416 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 GPR68Q15743 365 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 OTUD1Q5VV17 481 aaPredicted RBP4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 LVRNQ6Q4G3 990 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 C17orf99Q6UX52 265 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 FAM83HQ6ZRV2 1179 aaPredicted RBP4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 ZNF367Q7RTV3 350 aa4.82□□□□□ -1.64
SMCHD1-204ENST00000581226 PALB2Q86YC2 1186 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms