RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MTSS1LQ765P7 747 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 ZNF534Q76KX8 674 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 BBOF1Q8ND07 529 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 CYB5D2Q8WUJ1 264 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 ZNF599Q96NL3 588 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 APOL2Q9BQE5 337 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 COL4A3Q01955 1670 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 ASGR2P07307 311 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 OPRD1P41143 372 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 MAGEA6P43360 314 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 KDSRQ06136 332 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 ZNF235Q14590 738 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 MBLAC2Q68D91 279 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 C4orf22Q6V702 233 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 KDELC2Q7Z4H8 507 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 AGGF1Q8N302 714 aaeCLIP25.51■■□□□ 1.67
SHMT1-207ENST00000580002 NXPE3Q969Y0 559 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 FCRL5Q96RD9 977 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 C2orf49Q9BVC5 232 aaPredicted RBP25.51■■□□□ 1.67
SHMT1-207ENST00000580002 SLCO3A1Q9UIG8 710 aa25.51■■□□□ 1.67
SHMT1-207ENST00000580002 PRRT4C9JH25 899 aa25.5■■□□□ 1.67
SHMT1-207ENST00000580002 E7EVH7 732 aa25.5■■□□□ 1.67
SHMT1-207ENST00000580002 KCTD11Q693B1 232 aa25.5■■□□□ 1.67
SHMT1-207ENST00000580002 ITPRIPL1Q6GPH6 555 aa25.5■■□□□ 1.67
SHMT1-207ENST00000580002 PCGF5Q86SE9 256 aa25.5■■□□□ 1.67
SHMT1-207ENST00000580002 CAND1Q86VP6 1230 aaKnown RBP25.5■■□□□ 1.67
SHMT1-207ENST00000580002 EIF1ADQ8N9N8 165 aaKnown RBP25.5■■□□□ 1.67
SHMT1-207ENST00000580002 XPO6Q96QU8 1125 aaKnown RBP25.5■■□□□ 1.67
SHMT1-207ENST00000580002 PHF7Q9BWX1 381 aaPredicted RBP25.5■■□□□ 1.67
SHMT1-207ENST00000580002 SLC2A11Q9BYW1 496 aa25.5■■□□□ 1.67
SHMT1-207ENST00000580002 KCNK12Q9HB15 430 aa25.5■■□□□ 1.67
SHMT1-207ENST00000580002 FBRSL1Q9HCM7 1045 aaKnown RBP25.5■■□□□ 1.67
SHMT1-207ENST00000580002 LHX3Q9UBR4 397 aa25.5■■□□□ 1.67
SHMT1-207ENST00000580002 SHOC2Q9UQ13 582 aa25.5■■□□□ 1.67
SHMT1-207ENST00000580002 BMP1P13497 986 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 IL9P15248 144 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 CD86P42081 329 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 FASTKD3Q14CZ7 662 aaKnown RBP25.49■■□□□ 1.67
SHMT1-207ENST00000580002 ATXN7L2Q5T6C5 722 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-207ENST00000580002 IER5LQ5T953 404 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 CPA6Q8N4T0 437 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 ZCCHC9Q8N567 271 aaKnown RBP25.49■■□□□ 1.67
SHMT1-207ENST00000580002 DDX51Q8N8A6 666 aaKnown RBP eCLIP25.49■■□□□ 1.67
SHMT1-207ENST00000580002 EXOC4Q96A65 974 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 PSKH2Q96QS6 385 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 SEMA3CQ99985 751 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 CINPQ9BW66 212 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-207ENST00000580002 BRD9Q9H8M2 597 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 SEPT3Q9UH03 358 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 PMPCBO75439 489 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 ZNF821O75541 412 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-207ENST00000580002 LMAN1P49257 510 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 SLC12A1Q13621 1099 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 SMAD2Q15796 467 aaKnown RBP25.49■■□□□ 1.67
SHMT1-207ENST00000580002 LEXMQ3ZCV2 418 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 DGKKQ5KSL6 1271 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 PTCRAQ6ISU1 281 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-207ENST00000580002 HOOK3Q86VS8 718 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 HNRNPLLQ8WVV9 542 aaKnown RBP25.49■■□□□ 1.67
SHMT1-207ENST00000580002 IMP4Q96G21 291 aaKnown RBP25.49■■□□□ 1.67
SHMT1-207ENST00000580002 WDR83Q9BRX9 315 aaKnown RBP25.49■■□□□ 1.67
SHMT1-207ENST00000580002 TM6SF2Q9BZW4 377 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 SLC25A51Q9H1U9 297 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 ZNF446Q9NWS9 450 aa25.49■■□□□ 1.67
SHMT1-207ENST00000580002 AGTP01019 485 aa25.48■■□□□ 1.67
SHMT1-207ENST00000580002 SERPINH1P50454 418 aaKnown RBP25.48■■□□□ 1.67
SHMT1-207ENST00000580002 DHX9Q08211 1270 aaKnown RBP25.48■■□□□ 1.67
SHMT1-207ENST00000580002 PHTF2Q8N3S3 785 aa25.48■■□□□ 1.67
SHMT1-207ENST00000580002 SLC44A3Q8N4M1 653 aa25.48■■□□□ 1.67
SHMT1-207ENST00000580002 ACDQ96AP0 544 aa25.48■■□□□ 1.67
SHMT1-207ENST00000580002 SERPINB12Q96P63 405 aa25.48■■□□□ 1.67
SHMT1-207ENST00000580002 MGME1Q9BQP7 344 aa25.48■■□□□ 1.67
SHMT1-207ENST00000580002 TXLNGYQ9BZA5 131 aa25.48■■□□□ 1.67
SHMT1-207ENST00000580002 TNKS2Q9H2K2 1166 aa25.48■■□□□ 1.67
SHMT1-207ENST00000580002 NOD2Q9HC29 1040 aa25.48■■□□□ 1.67
SHMT1-207ENST00000580002 INSIG1O15503 277 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 SRCP12931 536 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 TPSB2P20231 275 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 SCNN1BP51168 640 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 SKOR1P84550 965 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 CAV1Q03135 178 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 TPSAB1Q15661 275 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 PCSK7Q16549 785 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 RETSATQ6NUM9 610 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 TMC3Q7Z5M5 1100 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 ATP11CQ8NB49 1132 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 IPMKQ8NFU5 416 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 OR6K2Q8NGY2 324 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 DEC1Q9P2X7 70 aa25.47■■□□□ 1.67
SHMT1-207ENST00000580002 ZNF189O75820 626 aaPredicted RBP25.46■■□□□ 1.67
SHMT1-207ENST00000580002 AP2A1O95782 977 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 CR2P20023 1033 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 TNNT3P45378 269 aaPredicted RBP25.46■■□□□ 1.67
SHMT1-207ENST00000580002 ECT2LQ008S8 904 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 RFTN1Q14699 578 aaPredicted RBP25.46■■□□□ 1.67
SHMT1-207ENST00000580002 ITPRIPL2Q3MIP1 535 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 INO80DQ53TQ3 878 aaPredicted RBP25.46■■□□□ 1.67
SHMT1-207ENST00000580002 KDELC1Q6UW63 502 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 IGDCC3Q8IVU1 814 aa25.46■■□□□ 1.67
SHMT1-207ENST00000580002 KLHDC8BQ8IXV7 354 aa25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms