RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PA2G4Q9UQ80 394 aaKnown RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 SLC5A6Q9Y289 635 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 PCDHA10Q9Y5I2 948 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 FREM2Q5SZK8 3169 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 KALRNO60229 2985 aa6.09□□□□□ -1.44
VPS53-219ENST00000576019 NUP98P52948 1817 aa6.09□□□□□ -1.44
VPS53-219ENST00000576019 FAM237BA0A1B0GVD1 139 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 FAM90A7PA6NKC0 464 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 FAM90A22PA8MWA6 464 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 FAM90A12PA8MX19 464 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 FAM90A23PA8MXZ1 464 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 MYO1GB0I1T2 1018 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 H3BQ06 376 aaPredicted RBP6.08□□□□□ -1.44
VPS53-219ENST00000576019 TP73O15350 636 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 GSC2O15499 205 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 PJA2O43164 708 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 TRIM13O60858 407 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 C1QTNF9P0C862 333 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 C6P13671 934 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 CHN1P15882 459 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 STMN1P16949 149 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 IFNAR1P17181 557 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 DRD1P21728 446 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 LRPAP1P30533 357 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 CIITAP33076 1130 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 HTR7P34969 479 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 GDNFP39905 211 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 GPD2P43304 727 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 CCR10P46092 362 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 LOXL3P58215 753 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 UFM1P61960 85 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 RPL7AP62424 266 aaKnown RBP6.08□□□□□ -1.44
VPS53-219ENST00000576019 TMEM115Q12893 351 aaPredicted RBP6.08□□□□□ -1.44
VPS53-219ENST00000576019 ADIPOQQ15848 244 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 MSMPQ1L6U9 139 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 TBRG1Q3YBR2 411 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 TAF2Q6P1X5 1199 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 KLHL35Q6PF15 583 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 NCEH1Q6PIU2 408 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 CATSPER4Q7RTX7 472 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 VSIG10LQ86VR7 867 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 MON1AQ86VX9 555 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 TTC5Q8N0Z6 440 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 DCLK2Q8N568 766 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 ZNF366Q8N895 744 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 PTGR2Q8N8N7 351 aaPredicted RBP6.08□□□□□ -1.44
VPS53-219ENST00000576019 C11orf44Q8N8P7 122 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 TMEM105Q8N8V8 129 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 OR6J1Q8NGC5 347 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 OR14K1Q8NGZ2 314 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 GDAP1Q8TB36 358 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 SLC2A12Q8TD20 617 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 ZCCHC14Q8WYQ9 949 aaKnown RBP6.08□□□□□ -1.44
VPS53-219ENST00000576019 SAAL1Q96ER3 474 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 PIGSQ96S52 555 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 SMOQ99835 787 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 TRIM5Q9C035 493 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 EPC1Q9H2F5 836 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 SMOC2Q9H3U7 446 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 KAT14Q9H8E8 782 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 COQ3Q9NZJ6 369 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 WDR35Q9P2L0 1181 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 ODF2LQ9ULJ1 636 aa6.08□□□□□ -1.44
VPS53-219ENST00000576019 SALL1Q9NSC2 1324 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 LOC105369274A0A096LPK9 316 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 LOC102723532A0A0G2JNH3 316 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 A8MXE2 369 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 PRR5-ARHGAP8B1AHC4 643 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 LDLRAD4O15165 306 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 RNMTO43148 476 aaKnown RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 CBFA2T3O75081 653 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 TIMP1P01033 207 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 PDGFBP01127 241 aaPredicted RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 URODP06132 367 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 TBXAS1P24557 533 aaPredicted RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 MCM3P25205 808 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 EEF1DP29692 281 aaKnown RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 CSF2RBP32927 897 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 MSX2P35548 267 aaPredicted RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 PBX1P40424 430 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 GSTM5P46439 218 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 GCLCP48506 637 aaPredicted RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 HSD17B4P51659 736 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 ARHGAP8P85298 464 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 PPATQ06203 517 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 TMEM62Q0P6H9 643 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 E2F5Q15329 346 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 FAM214AQ32MH5 1076 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 SLC9B1Q4ZJI4 515 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 ODF2Q5BJF6 829 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 NOMO2Q5JPE7 1267 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 RAB41Q5JT25 222 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 ADALQ6DHV7 355 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 TAPT1Q6NXT6 567 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 SLC2A7Q6PXP3 512 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 KIAA1324Q6UXG2 1013 aaKnown RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 CHST9Q7L1S5 443 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 PLPPR4Q7Z2D5 763 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 SDCCAG8Q86SQ7 713 aaPredicted RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 XYLT1Q86Y38 959 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms