RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 KLF15Q9UIH9 416 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 PNMA8BQ9ULN7 279 aaPredicted RBP6.87□□□□□ -1.31
VPS53-213ENST00000572334 RAI2Q9Y5P3 530 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 SETXQ7Z333 2677 aaKnown RBP6.87□□□□□ -1.31
VPS53-213ENST00000572334 ZNF462Q96JM2 2506 aa6.87□□□□□ -1.31
VPS53-213ENST00000572334 A0A1W2PNU3 283 aaPredicted RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 ILVBLA1L0T0 632 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 POM121BA6NF01 834 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 FAM72CH0Y354 149 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 KPNA3O00505 521 aaPredicted RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 CASC3O15234 703 aaKnown RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 LEFTY1O75610 366 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 PIAS2O75928 621 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 C1QL1O75973 258 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 CYP1A1P04798 512 aaPredicted RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 MMEP08473 750 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 CDK4P11802 303 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 ZNF18P17022 549 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 CHRNB2P17787 502 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 GKP32189 559 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 KRT9P35527 623 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 ACVRL1P37023 503 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 ABL2P42684 1182 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 MTIF2P46199 727 aaKnown RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 KLK7P49862 253 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 SERPINH1P50454 418 aaKnown RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 KRT83P78385 493 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 DEUP1Q05D60 604 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 PTP4A2Q12974 167 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 ZNF211Q13398 564 aaPredicted RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 HSP90AA4PQ58FG1 418 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 SLC45A4Q5BKX6 768 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 FAM102AQ5T9C2 384 aaPredicted RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 FAM72AQ5TYM5 149 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 CDCP2Q5VXM1 449 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 FAM72DQ6L9T8 149 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 PCSK4Q6UW60 755 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 ERN2Q76MJ5 926 aaKnown RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 ARCQ7LC44 396 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 NLRP14Q86W24 1093 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 FAM72BQ86X60 149 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 EMC1Q8N766 993 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 MLKLQ8NB16 471 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 ATP11CQ8NB49 1132 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 TMEM35BQ8NCS4 154 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 OR4C6Q8NH72 309 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 SNIP1Q8TAD8 396 aaKnown RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 GRIN3AQ8TCU5 1115 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 SLC20A1Q8WUM9 679 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 CPA5Q8WXQ8 436 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 NXPE2Q96DL1 559 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 C18orf8Q96DM3 657 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 KLHDC7BQ96G42 594 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 CFAP57Q96MR6 1250 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 HAPLN3Q96S86 360 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 KLF6Q99612 283 aaPredicted RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 TUBGCP2Q9BSJ2 902 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 C2orf49Q9BVC5 232 aaPredicted RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 GANQ9H2C0 597 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 CLSTN2Q9H4D0 955 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 SAMSN1Q9NSI8 373 aaKnown RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 IL36AQ9UHA7 158 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 GGT7Q9UJ14 662 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 NOCTQ9UK39 431 aaKnown RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 PCDHB1Q9Y5F3 818 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 FADS3Q9Y5Q0 445 aa6.86□□□□□ -1.31
VPS53-213ENST00000572334 FLNBO75369 2602 aaKnown RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 ZFC3H1O60293 1989 aaKnown RBP6.86□□□□□ -1.31
VPS53-213ENST00000572334 PIEZO2Q9H5I5 2752 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 F8VZ95 297 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 GOLGA8SH3BPF8 625 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 EPHB6O15197 1021 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 LZTS3O60299 673 aaPredicted RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 BRINP1O60477 761 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 MAGEC1O60732 1142 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 NEBLO76041 1014 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 GJB6O95452 261 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 MT-CO3P00414 261 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 F9P00740 461 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 PRNPP04156 253 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 PRB1P04280 392 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 CKMT1AP12532 417 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 ADRB3P13945 408 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 UCHL3P15374 230 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 HNRNPA2B1P22626 353 aaKnown RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 ITGB7P26010 798 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 OR1E1P30953 314 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 L1CAMP32004 1257 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 HNF1BP35680 557 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 JAM2P57087 298 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 FMO1Q01740 532 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 NRG1Q02297 640 aaPredicted RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 SEMG2Q02383 582 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 GNA12Q03113 381 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 GABPB1Q06547 395 aaPredicted RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 RAPGEF1Q13905 1077 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 FZD2Q14332 565 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 C15orf59Q2T9L4 293 aaPredicted RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 KLHL40Q2TBA0 621 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 CCDC14Q49A88 953 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms