RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 LSMEM2Q8N112 164 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 GPR78Q96P69 363 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 ACBD6Q9BR61 282 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 PPP1R12CQ9BZL4 782 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 GIT1Q9Y2X7 761 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 MAFKO60675 156 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 UBTFL6P0CB48 400 aaPredicted RBP23.11■■□□□ 1.29
VPS53-211ENST00000571805 DNAJB1P25685 340 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 ARNTP27540 789 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 EPHA3P29320 983 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 POU6F1Q14863 301 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 KBTBD6Q86V97 674 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 PPP2R3CQ969Q6 453 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 PKMYT1Q99640 499 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 CHST12Q9NRB3 414 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 MYLKQ15746 1914 aa23.11■■□□□ 1.29
VPS53-211ENST00000571805 VAPBO95292 243 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 PGK1P00558 417 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 THRAP10827 490 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 PEX19P40855 299 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 MPP1Q00013 466 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 PRKAA1Q13131 559 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 CTBP1Q13363 440 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 ESRP1Q6NXG1 681 aaKnown RBP23.1■■□□□ 1.29
VPS53-211ENST00000571805 TMC7Q7Z402 723 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 CEP97Q8IW35 865 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 CPSF7Q8N684 471 aaKnown RBP23.1■■□□□ 1.29
VPS53-211ENST00000571805 SCAMP5Q8TAC9 235 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 SCYL1Q96KG9 808 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 TSNARE1Q96NA8 513 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 FTHL17Q9BXU8 183 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 EBF3Q9H4W6 596 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 ZNF385DQ9H6B1 395 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 ACOT9Q9Y305 439 aa23.1■■□□□ 1.29
VPS53-211ENST00000571805 RGSL1A5PLK6 1076 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 IQCA1LA6NCM1 817 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 M0QZ92 97 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 NEMP1O14524 444 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 DLX3O60479 287 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 ANXA9O76027 345 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 HOXC13P31276 330 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 ADRA1AP35348 466 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 UGP2Q16851 508 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 LPCAT4Q643R3 524 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 LRRC8EQ6NSJ5 796 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 BEND5Q7L4P6 421 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 ATPAF2Q8N5M1 289 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 IPMKQ8NFU5 416 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 SYT17Q9BSW7 474 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 DMAP1Q9NPF5 467 aaPredicted RBP23.09■■□□□ 1.29
VPS53-211ENST00000571805 H3BNX3 289 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 MATN3O15232 486 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 CHRNA1P02708 482 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 ODC1P11926 461 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 POLD2P49005 469 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 DLG1Q12959 904 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 ZNF460Q14592 562 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 SFT2D3Q587I9 215 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 FOXB2Q5VYV0 432 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 CD300LGQ6UXG3 332 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 LRRTM3Q86VH5 581 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 HIPK4Q8NE63 616 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 STON2Q8WXE9 905 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 PPP1R36Q96LQ0 422 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 HAPLN3Q96S86 360 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 FICDQ9BVA6 458 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 SLC39A8Q9C0K1 460 aa23.09■■□□□ 1.29
VPS53-211ENST00000571805 CCDC189A1A4V9 331 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 MYADML2A6NDP7 307 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 IRAK2O43187 625 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 RAB10P61026 200 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 NSUN2Q08J23 767 aaKnown RBP eCLIP23.08■■□□□ 1.29
VPS53-211ENST00000571805 PPM1LQ5SGD2 360 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 MANEALQ5VSG8 457 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 MRPL10Q7Z7H8 261 aaKnown RBP23.08■■□□□ 1.29
VPS53-211ENST00000571805 SNX32Q86XE0 403 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 CCDC117Q8IWD4 279 aaPredicted RBP23.08■■□□□ 1.29
VPS53-211ENST00000571805 DDX50Q9BQ39 737 aaKnown RBP23.08■■□□□ 1.29
VPS53-211ENST00000571805 NUF2Q9BZD4 464 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 SLC2A6Q9UGQ3 507 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 AIM2O14862 343 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 CYP11A1P05108 521 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 BRCC3P46736 316 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 FKBP1BP68106 108 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 MSLNQ13421 630 aaPredicted RBP23.08■■□□□ 1.29
VPS53-211ENST00000571805 LRRC36Q1X8D7 754 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 PAN2Q504Q3 1202 aaKnown RBP23.08■■□□□ 1.29
VPS53-211ENST00000571805 TSTD2Q5T7W7 516 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 NXNL1Q96CM4 212 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 TMEM209Q96SK2 561 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 KLHL4Q9C0H6 718 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 SENP6Q9GZR1 1112 aaPredicted RBP23.08■■□□□ 1.29
VPS53-211ENST00000571805 NDFIP2Q9NV92 336 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 XPR1Q9UBH6 696 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 VTI1BQ9UEU0 232 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 TCAF1Q9Y4C2 921 aa23.08■■□□□ 1.29
VPS53-211ENST00000571805 FAM95CA0A1B0GW59 222 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 PAGE1O75459 146 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 RAG1P15918 1043 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 POTEHQ6S545 545 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms