RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CEACAM1P13688 526 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 IL12RB1P42701 662 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 CDKN2BP42772 138 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 PXNP49023 591 aaPredicted RBP20.99■□□□□ 0.95
VPS53-210ENST00000571456 NR2C2P49116 596 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 ZNF33AQ06730 810 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 RFTN1Q14699 578 aaPredicted RBP20.99■□□□□ 0.95
VPS53-210ENST00000571456 HNRNPA1L2Q32P51 320 aaKnown RBP20.99■□□□□ 0.95
VPS53-210ENST00000571456 HS1BP3Q53T59 392 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 SPOCD1Q6ZMY3 1216 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 ZNF354CQ86Y25 554 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 CCDC50Q8IVM0 306 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 REXO1L1PQ8IX06 675 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 SH2D3CQ8N5H7 860 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 CYB5D2Q8WUJ1 264 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 ISG20Q96AZ6 181 aaKnown RBP20.99■□□□□ 0.95
VPS53-210ENST00000571456 MYO19Q96H55 970 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 ZNF599Q96NL3 588 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 KCND1Q9NSA2 647 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 KLHL11Q9NVR0 708 aa20.99■□□□□ 0.95
VPS53-210ENST00000571456 APOL1O14791 398 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 KIF5CO60282 957 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 ADAM23O75077 832 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 ZNF189O75820 626 aaPredicted RBP20.98■□□□□ 0.95
VPS53-210ENST00000571456 APBB3O95704 486 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 C7P10643 843 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 ACVRL1P37023 503 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 SERPINH1P50454 418 aaKnown RBP20.98■□□□□ 0.95
VPS53-210ENST00000571456 IL10RBQ08334 325 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 MMRN1Q13201 1228 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 CAMK2GQ13555 558 aaPredicted RBP20.98■□□□□ 0.95
VPS53-210ENST00000571456 NCBP2-AS2Q69YL0 99 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 MFSD7Q6UXD7 560 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 ARHGAP12Q8IWW6 846 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 PLPP6Q8IY26 295 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 CCDC33Q8N5R6 958 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 TSTD1Q8NFU3 115 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 SORCS1Q8WY21 1168 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 KRT35Q92764 455 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 FATE1Q969F0 183 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 RNF25Q96BH1 459 aaPredicted RBP20.98■□□□□ 0.95
VPS53-210ENST00000571456 HMCESQ96FZ2 354 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 SLC39A8Q9C0K1 460 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 BRD8Q9H0E9 1235 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 HAUS2Q9NVX0 235 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 CACNA2D2Q9NY47 1150 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 EBF1Q9UH73 591 aa20.98■□□□□ 0.95
VPS53-210ENST00000571456 ALOX15BO15296 676 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 PRAMEF11O60813 436 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 FTCDO95954 541 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 EPHX1P07099 455 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 TGM2P21980 687 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 ARF5P84085 180 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 SFSWAPQ12872 951 aaKnown RBP20.97■□□□□ 0.95
VPS53-210ENST00000571456 RPS6KA1Q15418 735 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 MEI1Q5TIA1 1274 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 TIGD7Q6NT04 549 aaPredicted RBP20.97■□□□□ 0.95
VPS53-210ENST00000571456 RFX6Q8HWS3 928 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 PCDH20Q8N6Y1 951 aaKnown RBP20.97■□□□□ 0.95
VPS53-210ENST00000571456 NPWQ8N729 165 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 PQLC3Q8N755 202 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 ATP11CQ8NB49 1132 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 NSMCE1Q8WV22 266 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 ACOX2Q99424 681 aa20.97■□□□□ 0.95
VPS53-210ENST00000571456 FARP1Q9Y4F1 1045 aaPredicted RBP20.97■□□□□ 0.95
VPS53-210ENST00000571456 hCG_1818297A0A087WSY0 165 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 SNAP91O60641 907 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 SRCP12931 536 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 CSRP1P21291 193 aaKnown RBP20.96■□□□□ 0.95
VPS53-210ENST00000571456 CTSOP43234 321 aaPredicted RBP20.96■□□□□ 0.95
VPS53-210ENST00000571456 PAPOLAP51003 745 aaKnown RBP20.96■□□□□ 0.95
VPS53-210ENST00000571456 GALNT2Q10471 571 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 PLK5Q496M5 336 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 SOWAHCQ53LP3 525 aaPredicted RBP20.96■□□□□ 0.95
VPS53-210ENST00000571456 PKN3Q6P5Z2 889 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 DSG4Q86SJ6 1040 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 BBS5Q8N3I7 341 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 ATPAF2Q8N5M1 289 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 CELF6Q96J87 481 aaKnown RBP20.96■□□□□ 0.95
VPS53-210ENST00000571456 RPL10LQ96L21 214 aaKnown RBP20.96■□□□□ 0.95
VPS53-210ENST00000571456 CARD9Q9H257 536 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 SP110Q9HB58 689 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 ETNK2Q9NVF9 386 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 IPO11Q9UI26 975 aaKnown RBP20.96■□□□□ 0.95
VPS53-210ENST00000571456 SCML1Q9UN30 329 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 JRKLQ9Y4A0 524 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 NEUROG3Q9Y4Z2 214 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.96■□□□□ 0.95
VPS53-210ENST00000571456 ABCA7Q8IZY2 2146 aa20.96■□□□□ 0.95
VPS53-210ENST00000571456 NYNRINQ9P2P1 1898 aaKnown RBP20.95■□□□□ 0.94
VPS53-210ENST00000571456 A0A1W2PQF6 199 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 DFFAO00273 331 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 DDX3YO15523 660 aaKnown RBP20.95■□□□□ 0.94
VPS53-210ENST00000571456 RNASEH1O60930 286 aaKnown RBP20.95■□□□□ 0.94
VPS53-210ENST00000571456 TJP3O95049 919 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 PRKCHP24723 683 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 RECQLP46063 649 aaPredicted RBP20.95■□□□□ 0.94
VPS53-210ENST00000571456 MARCKSL1P49006 195 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 ZBTB16Q05516 673 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 ELAVL3Q14576 367 aaKnown RBP20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms