RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CASC3O15234 703 aaKnown RBP11.32□□□□□ -0.6
VPS53-207ENST00000570510 YY2O15391 372 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 ACTN4O43707 911 aaKnown RBP11.32□□□□□ -0.6
VPS53-207ENST00000570510 GCATO75600 419 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 FBXO21O94952 628 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 VDRP11473 427 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 CTSEP14091 401 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 PFKFB1P16118 471 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 CCKBRP32239 447 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 ANP32AP39687 249 aaKnown RBP11.32□□□□□ -0.6
VPS53-207ENST00000570510 NEK3P51956 506 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 PLK1P53350 603 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 ENPEPQ07075 957 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 FGL2Q14314 439 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 ZC3H12AQ5D1E8 599 aaKnown RBP11.32□□□□□ -0.6
VPS53-207ENST00000570510 C1orf220Q5T0J3 134 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 FOXD4L5Q5VV16 416 aaPredicted RBP11.32□□□□□ -0.6
VPS53-207ENST00000570510 FAM186BQ8IYM0 893 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 PHACTR4Q8IZ21 702 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 RBFAQ8N0V3 343 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 SH2D3CQ8N5H7 860 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 ARL10Q8N8L6 244 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 Q8N9G6 341 aaPredicted RBP11.32□□□□□ -0.6
VPS53-207ENST00000570510 OR6C4Q8NGE1 309 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 DQX1Q8TE96 717 aaKnown RBP11.32□□□□□ -0.6
VPS53-207ENST00000570510 FOXD4L4Q8WXT5 416 aaPredicted RBP11.32□□□□□ -0.6
VPS53-207ENST00000570510 TIGD1Q96MW7 591 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 RPRD1AQ96P16 312 aaPredicted RBP11.32□□□□□ -0.6
VPS53-207ENST00000570510 CATSPER2Q96P56 530 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 FEM1AQ9BSK4 669 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 TRIM62Q9BVG3 475 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 RAB20Q9NX57 234 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 IL36AQ9UHA7 158 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 KIAA1257Q9ULG3 409 aa11.32□□□□□ -0.6
VPS53-207ENST00000570510 BSNQ9UPA5 3926 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 MAPK13O15264 365 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 SART1O43290 800 aaKnown RBP11.31□□□□□ -0.6
VPS53-207ENST00000570510 STX10O60499 249 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 VPS4BO75351 444 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 CTSLP07711 333 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 ALPIP09923 528 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 TSHRP16473 764 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 NR2F2P24468 414 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 RPL13P26373 211 aaKnown RBP11.31□□□□□ -0.6
VPS53-207ENST00000570510 GTF2H1P32780 548 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 PSMC2P35998 433 aaKnown RBP11.31□□□□□ -0.6
VPS53-207ENST00000570510 MXI1P50539 228 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 VASPP50552 380 aaPredicted RBP11.31□□□□□ -0.6
VPS53-207ENST00000570510 BLKP51451 505 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 PPARDQ03181 441 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 STK4Q13043 487 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 CUL4BQ13620 913 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 ELOCQ15369 112 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 TMEM259Q4ZIN3 620 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 ARSIQ5FYB1 569 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 PHF19Q5T6S3 580 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 FHL5Q5TD97 284 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 PMF1Q6P1K2 205 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 ZSCAN30Q86W11 494 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 FSTL5Q8N475 847 aaPredicted RBP11.31□□□□□ -0.6
VPS53-207ENST00000570510 CLEC4CQ8WTT0 213 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 HDAC8Q9BY41 377 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 LRRN3Q9H3W5 708 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 ST7Q9NRC1 585 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 FOXJ2Q9P0K8 574 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 XPO7Q9UIA9 1087 aaKnown RBP11.31□□□□□ -0.6
VPS53-207ENST00000570510 GGT7Q9UJ14 662 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 VPS4AQ9UN37 437 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 NAALADL1Q9UQQ1 740 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 DOCK9Q9BZ29 2069 aa11.31□□□□□ -0.6
VPS53-207ENST00000570510 NBASA2RRP1 2371 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 KCNU1A8MYU2 1149 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 M0QYV0 167 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 RAD51BO15315 384 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 RHOBTB3O94955 611 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 SLC2A3P11169 496 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 ADRB3P13945 408 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 WT1P19544 449 aaPredicted RBP11.3□□□□□ -0.6
VPS53-207ENST00000570510 DNA2P51530 1060 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 EIF2B5Q13144 721 aaKnown RBP11.3□□□□□ -0.6
VPS53-207ENST00000570510 SEPT6Q14141 434 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 TCEA2Q15560 299 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 NFIL3Q16649 462 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 DTX1Q86Y01 620 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 CCNJLQ8IV13 435 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 OR2A12Q8NGT7 310 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 PAGE5Q96GU1 130 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 SLC39A13Q96H72 371 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 PHF12Q96QT6 1004 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 LRRC61Q9BV99 259 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 C2orf49Q9BVC5 232 aaPredicted RBP11.3□□□□□ -0.6
VPS53-207ENST00000570510 SLC12A9Q9BXP2 914 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 KCTD10Q9H3F6 313 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 TCEAL2Q9H3H9 227 aaPredicted RBP11.3□□□□□ -0.6
VPS53-207ENST00000570510 GPR27Q9NS67 375 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS53-207ENST00000570510 CHMP5Q9NZZ3 219 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 GPR34Q9UPC5 381 aa11.3□□□□□ -0.6
VPS53-207ENST00000570510 UTP20O75691 2785 aaKnown RBP11.29□□□□□ -0.6
VPS53-207ENST00000570510 RP1P56715 2156 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms