RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 A0A1W2PQF6 199 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 LRRD1A4D1F6 860 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 ARHGAP42A6NI28 874 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 RASA4BC9J798 803 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 RASA4O43374 803 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 KRT86O43790 486 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 OPHN1O60890 802 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 SERPINF2P08697 491 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 CCDC175P0C221 793 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 AMPD1P23109 780 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 SERPINB6P35237 376 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 GEMIN4P57678 1058 aaKnown RBP17.6■□□□□ 0.41
CLN3-217ENST00000565354 FAM193AP78312 1265 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 CCZ1BP86790 482 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 CCZ1P86791 482 aaPredicted RBP17.6■□□□□ 0.41
CLN3-217ENST00000565354 ENPP2Q13822 863 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 ZNF423Q2M1K9 1284 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 PARP15Q460N3 678 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 TMCO3Q6UWJ1 677 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 KIAA1324Q6UXG2 1013 aaKnown RBP17.6■□□□□ 0.41
CLN3-217ENST00000565354 RAB44Q7Z6P3 723 aaPredicted RBP17.6■□□□□ 0.41
CLN3-217ENST00000565354 LZTR1Q8N653 840 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 CELF6Q96J87 481 aaKnown RBP17.6■□□□□ 0.41
CLN3-217ENST00000565354 MRGPRX3Q96LB0 322 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 TMEM245Q9H330 911 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 CAPN10Q9HC96 672 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 FSCN3Q9NQT6 498 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 SLCO3A1Q9UIG8 710 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.6■□□□□ 0.41
CLN3-217ENST00000565354 GPSM3Q9Y4H4 160 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 CELSR3Q9NYQ7 3312 aa17.6■□□□□ 0.41
CLN3-217ENST00000565354 TTC34A8MYJ7 566 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 PSTPIP1O43586 416 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 BNIP3LO60238 219 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 RNASEH1O60930 286 aaKnown RBP17.59■□□□□ 0.41
CLN3-217ENST00000565354 GLDCP23378 1020 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 NDST2P52849 883 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 MMRN1Q13201 1228 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 HNRNPDQ14103 355 aaKnown RBP17.59■□□□□ 0.41
CLN3-217ENST00000565354 DPYSQ14117 519 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 DPYSL3Q14195 570 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 HNRNPA1L2Q32P51 320 aaKnown RBP17.59■□□□□ 0.41
CLN3-217ENST00000565354 LRRC38Q5VT99 294 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 LINGO4Q6UY18 593 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 RABEPKQ7Z6M1 372 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 UMODL1-AS1Q8N2C9 162 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 KIAA1524Q8TCG1 905 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.59■□□□□ 0.41
CLN3-217ENST00000565354 HMCESQ96FZ2 354 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 CCDC114Q96M63 670 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 ZNF670Q9BS34 389 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 MAK16Q9BXY0 300 aaKnown RBP17.59■□□□□ 0.41
CLN3-217ENST00000565354 GOLPH3Q9H4A6 298 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 FBRSQ9HAH7 460 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 SALL4Q9UJQ4 1053 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 PLXNB3Q9ULL4 1909 aa17.59■□□□□ 0.41
CLN3-217ENST00000565354 MUC22E2RYF6 1773 aaPredicted RBP17.58■□□□□ 0.41
CLN3-217ENST00000565354 TARSL2A2RTX5 802 aaKnown RBP17.58■□□□□ 0.4
CLN3-217ENST00000565354 ZSCAN5CA6NGD5 496 aaPredicted RBP17.58■□□□□ 0.4
CLN3-217ENST00000565354 DFFAO00273 331 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 CD48P09326 243 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 ACADMP11310 421 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 CD59P13987 128 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 GABRG2P18507 467 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 KDELR1P24390 212 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 RECQLP46063 649 aaPredicted RBP17.58■□□□□ 0.4
CLN3-217ENST00000565354 CLCN6P51797 869 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 RPL6Q02878 288 aaKnown RBP17.58■□□□□ 0.4
CLN3-217ENST00000565354 SLC20A2Q08357 652 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 DLG2Q15700 870 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 CACUL1Q86Y37 369 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 SYCE1Q8N0S2 351 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 SH2D3CQ8N5H7 860 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 MINDY1Q8N5J2 469 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 OR2T3Q8NH03 318 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 PRCCQ92733 491 aaPredicted RBP17.58■□□□□ 0.4
CLN3-217ENST00000565354 MYO19Q96H55 970 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 ACE2Q9BYF1 805 aaPredicted RBP17.58■□□□□ 0.4
CLN3-217ENST00000565354 MTG2Q9H4K7 406 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 PRDM16Q9HAZ2 1276 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 TRIM10Q9UDY6 481 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 GUCA1BQ9UMX6 200 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 HS3ST2Q9Y278 367 aa17.58■□□□□ 0.4
CLN3-217ENST00000565354 FARP1Q9Y4F1 1045 aaPredicted RBP17.58■□□□□ 0.4
CLN3-217ENST00000565354 FLNBO75369 2602 aaKnown RBP17.57■□□□□ 0.4
CLN3-217ENST00000565354 HELZ2Q9BYK8 2649 aaKnown RBP17.57■□□□□ 0.4
CLN3-217ENST00000565354 ARHGAP33O14559 1287 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 KDELR3O43731 214 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 ATP9BO43861 1147 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 SIN3BO75182 1162 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 SRCP12931 536 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 NDUFV2P19404 249 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 SERPINH1P50454 418 aaKnown RBP17.57■□□□□ 0.4
CLN3-217ENST00000565354 VASPP50552 380 aaPredicted RBP17.57■□□□□ 0.4
CLN3-217ENST00000565354 ARSEP51690 589 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 ARF5P84085 180 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 CAMK2GQ13555 558 aaPredicted RBP17.57■□□□□ 0.4
CLN3-217ENST00000565354 SOWAHCQ53LP3 525 aaPredicted RBP17.57■□□□□ 0.4
CLN3-217ENST00000565354 ANKRD20A8PQ5CZ79 823 aa17.57■□□□□ 0.4
CLN3-217ENST00000565354 C19orf48Q6RUI8 117 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms