RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 GRHL1Q9NZI5 618 aa13.03□□□□□ -0.32
CLK3-214ENST00000564096 LIMD1Q9UGP4 676 aa13.03□□□□□ -0.32
CLK3-214ENST00000564096 HS3ST2Q9Y278 367 aa13.03□□□□□ -0.32
CLK3-214ENST00000564096 ATP8A1Q9Y2Q0 1164 aa13.03□□□□□ -0.32
CLK3-214ENST00000564096 NYNRINQ9P2P1 1898 aaKnown RBP13.02□□□□□ -0.32
CLK3-214ENST00000564096 CCDC151A5D8V7 595 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 OTOL1A6NHN0 477 aaPredicted RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 BHMG1C9JSJ3 638 aaPredicted RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 AP3B1O00203 1094 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 SRPRAP08240 638 aaKnown RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 DLDP09622 509 aaKnown RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 IL9P15248 144 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 GRIA2P42262 883 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 MAGEA6P43360 314 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 RECQLP46063 649 aaPredicted RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 NUMBP49757 651 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 PLTPP55058 493 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 AP1S1P61966 158 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 MPP3Q13368 585 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 KCNJ11Q14654 390 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 GEN1Q17RS7 908 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 FAXCQ5TGI0 409 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 ALG1LQ6GMV1 187 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 NAPEPLDQ6IQ20 393 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 HIBCHQ6NVY1 386 aaPredicted RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 C22orf39Q6P5X5 142 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 ADIPOR2Q86V24 386 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 RALGPS2Q86X27 583 aaPredicted RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 ADHFE1Q8IWW8 467 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 TAB3Q8N5C8 712 aaPredicted RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 PCDH20Q8N6Y1 951 aaKnown RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 CNTD1Q8N815 330 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 KDM1BQ8NB78 822 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 TTC8Q8TAM2 541 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 CPT1BQ92523 772 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 PRCCQ92733 491 aaPredicted RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 ART4Q93070 314 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 TTC17Q96AE7 1141 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 GDAP1L1Q96MZ0 367 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 PHACTR1Q9C0D0 580 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 EPC1Q9H2F5 836 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 ETNK1Q9HBU6 452 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 XAB2Q9HCS7 855 aaKnown RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 SCUBE2Q9NQ36 999 aa13.02□□□□□ -0.33
CLK3-214ENST00000564096 INTS6Q9UL03 887 aaKnown RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 FARP1Q9Y4F1 1045 aaPredicted RBP13.02□□□□□ -0.33
CLK3-214ENST00000564096 TBC1D3BA6NDS4 549 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 LOC730098B7Z3J9 87 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 KAT7O95251 611 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 METTL18O95568 372 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 AP2A1O95782 977 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 GSRP00390 522 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 SERPINF2P08697 491 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 CISD3P0C7P0 127 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 SRFP11831 508 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 GLULP15104 373 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 IVDP26440 423 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 CTHP32929 405 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 CD68P34810 354 aaPredicted RBP13.01□□□□□ -0.33
CLK3-214ENST00000564096 OPRD1P41143 372 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 CARSP49589 748 aaKnown RBP13.01□□□□□ -0.33
CLK3-214ENST00000564096 VASPP50552 380 aaPredicted RBP13.01□□□□□ -0.33
CLK3-214ENST00000564096 ARL4CP56559 192 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 SNRPD1P62314 119 aaKnown RBP13.01□□□□□ -0.33
CLK3-214ENST00000564096 TFF2Q03403 129 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 TDGQ13569 410 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 GAB4Q2WGN9 574 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 DNAJC21Q5F1R6 531 aaKnown RBP13.01□□□□□ -0.33
CLK3-214ENST00000564096 ASTLQ6HA08 431 aaPredicted RBP13.01□□□□□ -0.33
CLK3-214ENST00000564096 EMBQ6PCB8 327 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 LINC00523Q86TU6 105 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 SLC44A3Q8N4M1 653 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 ZCCHC9Q8N567 271 aaKnown RBP13.01□□□□□ -0.33
CLK3-214ENST00000564096 SH2D3CQ8N5H7 860 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 FBXO25Q8TCJ0 367 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 ISG20Q96AZ6 181 aaKnown RBP13.01□□□□□ -0.33
CLK3-214ENST00000564096 IMP4Q96G21 291 aaKnown RBP13.01□□□□□ -0.33
CLK3-214ENST00000564096 NUDCD1Q96RS6 583 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 SEMA3CQ99985 751 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 P2RY13Q9BPV8 354 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 FAM153AQ9UHL3 310 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 NFU1Q9UMS0 254 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 PLA2G4CQ9UP65 541 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 ERVW-1Q9UQF0 538 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 FCF1Q9Y324 198 aaKnown RBP13.01□□□□□ -0.33
CLK3-214ENST00000564096 PIAS3Q9Y6X2 628 aa13.01□□□□□ -0.33
CLK3-214ENST00000564096 F5H423 210 aaPredicted RBP13□□□□□ -0.33
CLK3-214ENST00000564096 SPECC1L-ADORA2AF8WAN1 911 aa13□□□□□ -0.33
CLK3-214ENST00000564096 NPC1O15118 1278 aa13□□□□□ -0.33
CLK3-214ENST00000564096 INSIG1O15503 277 aa13□□□□□ -0.33
CLK3-214ENST00000564096 ASGR2P07307 311 aa13□□□□□ -0.33
CLK3-214ENST00000564096 SRCP12931 536 aa13□□□□□ -0.33
CLK3-214ENST00000564096 CD86P42081 329 aa13□□□□□ -0.33
CLK3-214ENST00000564096 SLC6A11P48066 632 aa13□□□□□ -0.33
CLK3-214ENST00000564096 MAXP61244 160 aa13□□□□□ -0.33
CLK3-214ENST00000564096 DSC2Q02487 901 aa13□□□□□ -0.33
CLK3-214ENST00000564096 RAD51Q06609 339 aa13□□□□□ -0.33
CLK3-214ENST00000564096 NSUN2Q08J23 767 aaKnown RBP eCLIP13□□□□□ -0.33
CLK3-214ENST00000564096 NAA30Q147X3 362 aaPredicted RBP13□□□□□ -0.33
CLK3-214ENST00000564096 GRM3Q14832 879 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms