RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ACOT8O14734 319 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 H2AFYO75367 372 aaKnown RBP13.39□□□□□ -0.27
CLN3-210ENST00000563874 DAB1O75553 588 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 DDHD2O94830 711 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 ZBTB7AO95365 584 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 ADRA1BP35368 520 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 MAP3K7CLP57077 242 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 POU6F1Q14863 301 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 MARCH8Q5T0T0 291 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 OSTM1Q86WC4 334 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 AHI1Q8N157 1196 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 PNPLA1Q8N8W4 532 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 WNT8BQ93098 351 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 OSMRQ99650 979 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 GPR22Q99680 433 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 RNF39Q9H2S5 420 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 TUT1Q9H6E5 874 aaKnown RBP13.39□□□□□ -0.27
CLN3-210ENST00000563874 GALNT8Q9NY28 637 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 CACNG4Q9UBN1 327 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 STAP1Q9ULZ2 295 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 PHF24Q9UPV7 400 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 C7orf72A4D263 438 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 FZD9O00144 591 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 XPO1O14980 1071 aaKnown RBP13.39□□□□□ -0.27
CLN3-210ENST00000563874 CABYRO75952 493 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 MT-CO1P00395 513 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 SCNN1AP37088 669 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 ADCYAP1R1P41586 468 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 RPL34P49207 117 aaKnown RBP13.39□□□□□ -0.27
CLN3-210ENST00000563874 TKTL1P51854 596 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 SOX4Q06945 474 aaPredicted RBP13.39□□□□□ -0.27
CLN3-210ENST00000563874 LAYNQ6UX15 382 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 CYP2R1Q6VVX0 501 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 CPSF7Q8N684 471 aaKnown RBP13.39□□□□□ -0.27
CLN3-210ENST00000563874 TMEM102Q8N9M5 508 aaPredicted RBP13.39□□□□□ -0.27
CLN3-210ENST00000563874 B3GALNT2Q8NCR0 500 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 ZNF512Q96ME7 567 aaPredicted RBP13.39□□□□□ -0.27
CLN3-210ENST00000563874 GBA3Q9H227 469 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 CYP4F12Q9HCS2 524 aa13.39□□□□□ -0.27
CLN3-210ENST00000563874 HEMK1Q9Y5R4 338 aaPredicted RBP13.39□□□□□ -0.27
CLN3-210ENST00000563874 YJEFN3A6XGL0 299 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 PGK1P00558 417 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 CSE1LP55060 971 aaKnown RBP13.38□□□□□ -0.27
CLN3-210ENST00000563874 GRIK4Q16099 956 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 LRRC8EQ6NSJ5 796 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 SLC27A1Q6PCB7 646 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 ZNF410Q86VK4 478 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 MFSD6LQ8IWD5 586 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 CATSPER1Q8NEC5 780 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 STYXQ8WUJ0 223 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 LRTOMTQ8WZ04 291 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 ZFRQ96KR1 1074 aaKnown RBP13.38□□□□□ -0.27
CLN3-210ENST00000563874 C16orf70Q9BSU1 422 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 MCMBPQ9BTE3 642 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 MED10Q9BTT4 135 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 ZNF696Q9H7X3 374 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 LIN28AQ9H9Z2 209 aaKnown RBP13.38□□□□□ -0.27
CLN3-210ENST00000563874 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.38□□□□□ -0.27
CLN3-210ENST00000563874 E7ENX8 843 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 SLC25A27O95847 323 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 FYNP06241 537 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 SLC5A2P31639 672 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 DCAF4L1Q3SXM0 396 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 MGAT5BQ3V5L5 792 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 TSTD2Q5T7W7 516 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 GET4Q7L5D6 327 aaPredicted RBP13.38□□□□□ -0.27
CLN3-210ENST00000563874 RNF135Q8IUD6 432 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 KDM1BQ8NB78 822 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 CEP70Q8NHQ1 597 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 EDEM1Q92611 657 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 NT5C3BQ969T7 300 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 TMIGD2Q96BF3 282 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 IL22Q9GZX6 179 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 RHOJQ9H4E5 214 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 COQ10BQ9H8M1 238 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 PLEKHA5Q9HAU0 1116 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 TRPC7Q9HCX4 862 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 ACOT9Q9Y305 439 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 TLL2Q9Y6L7 1015 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 A0A0G2JMZ2 1700 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 LRRC37A2A6NM11 1700 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 SMIM28A0A1B0GU29 152 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 CAPN15O75808 1086 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 TMCC1O94876 653 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 MT-CYBP00156 380 aaPredicted RBP13.38□□□□□ -0.27
CLN3-210ENST00000563874 PSMC3P17980 439 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 EPHX2P34913 555 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 PPIDQ08752 370 aaKnown RBP13.38□□□□□ -0.27
CLN3-210ENST00000563874 PDAP1Q13442 181 aaKnown RBP13.38□□□□□ -0.27
CLN3-210ENST00000563874 SLC12A1Q13621 1099 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 LAMC2Q13753 1193 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 DEFB132Q7Z7B7 95 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 SETD3Q86TU7 594 aaPredicted RBP13.38□□□□□ -0.27
CLN3-210ENST00000563874 DUSP16Q9BY84 665 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 ULBP1Q9BZM6 244 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 TRPV6Q9H1D0 765 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 DDIT4Q9NX09 232 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 CCDC167Q9P0B6 97 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 BCAP29Q9UHQ4 241 aa13.38□□□□□ -0.27
CLN3-210ENST00000563874 MID2Q9UJV3 735 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 230 ms