RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 STX2P32856 288 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 AVPR1AP37288 418 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 MSH2P43246 934 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 SLCO1A2P46721 670 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 NPY2RP49146 381 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 PAPOLAP51003 745 aaKnown RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 GYS2P54840 703 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 GEMIN4P57678 1058 aaKnown RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 MAGOHP61326 146 aaKnown RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 IFI35P80217 286 aaPredicted RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 SKOR1P84550 965 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 HNRNPDQ14103 355 aaKnown RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 POLD3Q15054 466 aaPredicted RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 RASA2Q15283 850 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 LONRF1Q17RB8 773 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 PARP15Q460N3 678 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 C5orf22Q49AR2 442 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 FAXCQ5TGI0 409 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 AFMIDQ63HM1 303 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 VITQ6UXI7 678 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 GAREM2Q75VX8 874 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 LINC00523Q86TU6 105 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 CAND1Q86VP6 1230 aaKnown RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 NLRP14Q86W24 1093 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 ZNF354CQ86Y25 554 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 TDRPQ86YL5 185 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 ARID3BQ8IVW6 561 aaPredicted RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 C1orf210Q8IVY1 113 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 MFSD6LQ8IWD5 586 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 ZNF683Q8IZ20 524 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 NETO2Q8NC67 525 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 EPS8L3Q8TE67 593 aaKnown RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 TLCD1Q96CP7 247 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 MSANTD3Q96H12 275 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 AGAP3Q96P47 875 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 EBNA1BP2Q99848 306 aaKnown RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 PRMT1Q99873 361 aaKnown RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 KLF16Q9BXK1 252 aaPredicted RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 CAPS2Q9BXY5 557 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 ZNF334Q9HCZ1 680 aaPredicted RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 LTB4R2Q9NPC1 389 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 TRPV5Q9NQA5 729 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 HEBP1Q9NRV9 189 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 RBM22Q9NW64 420 aaKnown RBP eCLIP9.1□□□□□ -0.95
VPS39-207ENST00000563692 SPATA6Q9NWH7 488 aaPredicted RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 THG1LQ9NWX6 298 aaKnown RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 OBP2AQ9NY56 170 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 BFARQ9NZS9 450 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 IPO11Q9UI26 975 aaKnown RBP9.1□□□□□ -0.95
VPS39-207ENST00000563692 ZNF510Q9Y2H8 683 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 TEX264Q9Y6I9 313 aa9.1□□□□□ -0.95
VPS39-207ENST00000563692 KMT2EQ8IZD2 1858 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 TYW5A2RUC4 315 aaKnown RBP9.09□□□□□ -0.95
VPS39-207ENST00000563692 RASA4BC9J798 803 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 PROB1E7EW31 1015 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 POC1B-GALNT4F8VUJ3 575 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 RASA4O43374 803 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 LAMTOR5O43504 91 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 RAMP2O60895 175 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 AVILO75366 819 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 CLDN11O75508 207 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 SUN1O94901 812 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 AP2A1O95782 977 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 OAS1P00973 400 aaKnown RBP9.09□□□□□ -0.95
VPS39-207ENST00000563692 GLULP15104 373 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 HDCP19113 662 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 PSMB4P28070 264 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 SSTR1P30872 391 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 HPDP32754 393 aaPredicted RBP9.09□□□□□ -0.95
VPS39-207ENST00000563692 NBL1P41271 181 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 IFNAR2P48551 515 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 CDH4P55283 916 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 GPX6P59796 221 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 CYP4F8P98187 520 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 GAD2Q05329 585 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 IL10RBQ08334 325 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 FASTKD3Q14CZ7 662 aaKnown RBP9.09□□□□□ -0.95
VPS39-207ENST00000563692 MSS51Q4VC12 460 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 SYCP2LQ5T4T6 812 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 ADGRF1Q5T601 910 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 MARC1Q5VT66 337 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 TTC39BQ5VTQ0 682 aaPredicted RBP9.09□□□□□ -0.95
VPS39-207ENST00000563692 NAPEPLDQ6IQ20 393 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 CYS1Q717R9 158 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 DENND1CQ8IV53 801 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 ARHGAP12Q8IWW6 846 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 TP53INP2Q8IXH6 220 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 LGI2Q8N0V4 545 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 BBS5Q8N3I7 341 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 SH2D3CQ8N5H7 860 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 DNAAF3Q8N9W5 541 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 BPIFB1Q8TDL5 484 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 FBF1Q8TES7 1133 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 ARHGEF2Q92974 986 aaKnown RBP9.09□□□□□ -0.95
VPS39-207ENST00000563692 IGSF8Q969P0 613 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 FCRL5Q96RD9 977 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 PHOX2BQ99453 314 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 IL12RB2Q99665 862 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 LRRC3Q9BY71 257 aa9.09□□□□□ -0.95
VPS39-207ENST00000563692 MAGEH1Q9H213 219 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms