RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 GDAP1L1Q96MZ0 367 aa17■□□□□ 0.31
CLK3-207ENST00000562389 ZNF599Q96NL3 588 aa17■□□□□ 0.31
CLK3-207ENST00000562389 OMDQ99983 421 aa17■□□□□ 0.31
CLK3-207ENST00000562389 HEPHQ9BQS7 1158 aa17■□□□□ 0.31
CLK3-207ENST00000562389 BTBD1Q9H0C5 482 aa17■□□□□ 0.31
CLK3-207ENST00000562389 PCED1AQ9H1Q7 454 aa17■□□□□ 0.31
CLK3-207ENST00000562389 HECAQ9UBI9 543 aaPredicted RBP17■□□□□ 0.31
CLK3-207ENST00000562389 LHX3Q9UBR4 397 aa17■□□□□ 0.31
CLK3-207ENST00000562389 TRIM10Q9UDY6 481 aa17■□□□□ 0.31
CLK3-207ENST00000562389 SERGEFQ9UGK8 458 aa17■□□□□ 0.31
CLK3-207ENST00000562389 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17■□□□□ 0.31
CLK3-207ENST00000562389 WASF2Q9Y6W5 498 aa17■□□□□ 0.31
CLK3-207ENST00000562389 NUMA1Q14980 2115 aa17■□□□□ 0.31
CLK3-207ENST00000562389 RALGAPA1Q6GYQ0 2036 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 MAFKO60675 156 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 RNASEH2AO75792 299 aaKnown RBP16.99■□□□□ 0.31
CLK3-207ENST00000562389 ACSL1P33121 698 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 CTNNA1P35221 906 aaKnown RBP16.99■□□□□ 0.31
CLK3-207ENST00000562389 DRD3P35462 400 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 DHPSP49366 369 aaPredicted RBP16.99■□□□□ 0.31
CLK3-207ENST00000562389 RHOAP61586 193 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 GALNT2Q10471 571 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 TAZQ16635 292 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 SLC9A4Q6AI14 798 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 ALYREFQ86V81 257 aaKnown RBP16.99■□□□□ 0.31
CLK3-207ENST00000562389 HDDC3Q8N4P3 179 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 CADM4Q8NFZ8 388 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 KIAA1524Q8TCG1 905 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 ANP32BQ92688 251 aaKnown RBP16.99■□□□□ 0.31
CLK3-207ENST00000562389 RNF25Q96BH1 459 aaPredicted RBP16.99■□□□□ 0.31
CLK3-207ENST00000562389 ZNF419Q96HQ0 510 aaPredicted RBP16.99■□□□□ 0.31
CLK3-207ENST00000562389 LRIG1Q96JA1 1093 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 GPR174Q9BXC1 333 aa16.99■□□□□ 0.31
CLK3-207ENST00000562389 OTOGLQ3ZCN5 2332 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 SLC7A4O43246 635 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 KRT86O43790 486 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 LRP3O75074 770 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 LEFTY1O75610 366 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 PALMO75781 387 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 SEMA4FO95754 770 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 IGSF6O95976 241 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 CCDC175P0C221 793 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 ZFXP17010 805 aaPredicted RBP16.98■□□□□ 0.31
CLK3-207ENST00000562389 CTNNA2P26232 953 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 GARSP41250 739 aaKnown RBP16.98■□□□□ 0.31
CLK3-207ENST00000562389 PTGER3P43115 390 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 MARCKSL1P49006 195 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 METAP1P53582 386 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 ARSIQ5FYB1 569 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 ATXN7L2Q5T6C5 722 aaPredicted RBP16.98■□□□□ 0.31
CLK3-207ENST00000562389 TMCO4Q5TGY1 634 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 LYSMD4Q5XG99 296 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 MFSD7Q6UXD7 560 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 ZNF662Q6ZS27 426 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 SLC41A1Q8IVJ1 513 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 SYCE1Q8N0S2 351 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 RNF10Q8N5U6 811 aaKnown RBP16.98■□□□□ 0.31
CLK3-207ENST00000562389 PLD5Q8N7P1 536 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 GRIN3AQ8TCU5 1115 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.98■□□□□ 0.31
CLK3-207ENST00000562389 GANCQ8TET4 914 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 KRT35Q92764 455 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 FOXJ1Q92949 421 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 PPP1R16AQ96I34 528 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 RBM41Q96IZ5 413 aaKnown RBP16.98■□□□□ 0.31
CLK3-207ENST00000562389 MAK16Q9BXY0 300 aaKnown RBP16.98■□□□□ 0.31
CLK3-207ENST00000562389 NEUROG2Q9H2A3 272 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 ZDHHC6Q9H6R6 413 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 PCDHA3Q9Y5H8 950 aa16.98■□□□□ 0.31
CLK3-207ENST00000562389 VPS13AQ96RL7 3174 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 BCLAF3A2AJT9 711 aaKnown RBP16.97■□□□□ 0.31
CLK3-207ENST00000562389 CCDC66A2RUB6 948 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 RNF103O00237 685 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 KPNA3O00505 521 aaPredicted RBP16.97■□□□□ 0.31
CLK3-207ENST00000562389 APOL1O14791 398 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 ZRANB2O95218 330 aaKnown RBP eCLIP16.97■□□□□ 0.31
CLK3-207ENST00000562389 POP4O95707 220 aaKnown RBP16.97■□□□□ 0.31
CLK3-207ENST00000562389 PEX11BO96011 259 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 MX2P20592 715 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 DPP6P42658 865 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 CDKN2BP42772 138 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 GBE1Q04446 702 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 RAD51Q06609 339 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 ZNF33AQ06730 810 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 LBRQ14739 615 aaKnown RBP16.97■□□□□ 0.31
CLK3-207ENST00000562389 MYLK3Q32MK0 819 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 AGBL4Q5VU57 503 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 SPOCD1Q6ZMY3 1216 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 ARMCX6Q7L4S7 300 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 CYP2U1Q7Z449 544 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 NT5DC3Q86UY8 548 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 RCOR2Q8IZ40 523 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 RYBPQ8N488 228 aaPredicted RBP16.97■□□□□ 0.31
CLK3-207ENST00000562389 DEFB119Q8N690 84 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 OR6K2Q8NGY2 324 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 EXD1Q8NHP7 514 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 VOPP1Q96AW1 172 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 ARRDC3Q96B67 414 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 PDLIM2Q96JY6 352 aa16.97■□□□□ 0.31
CLK3-207ENST00000562389 HSPA12BQ96MM6 686 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms