RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 STK33Q9BYT3 514 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 DYRK4Q9NR20 520 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 METTL5Q9NRN9 209 aaKnown RBP11.88□□□□□ -0.51
USP3-220ENST00000561381 NDFIP2Q9NV92 336 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 IL36AQ9UHA7 158 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 FCF1Q9Y324 198 aaKnown RBP11.88□□□□□ -0.51
USP3-220ENST00000561381 PAXBP1Q9Y5B6 917 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 WASF2Q9Y6W5 498 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 NBEAQ8NFP9 2946 aa11.88□□□□□ -0.51
USP3-220ENST00000561381 TRPM6Q9BX84 2022 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 BAHCC1Q9P281 2608 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 BHMG1C9JSJ3 638 aaPredicted RBP11.87□□□□□ -0.51
USP3-220ENST00000561381 FFAR2O15552 330 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 TLX3O43711 291 aaPredicted RBP11.87□□□□□ -0.51
USP3-220ENST00000561381 MAGEC1O60732 1142 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 GFPT2O94808 682 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 CD160O95971 181 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 MYF5P13349 255 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 CHRNB2P17787 502 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 HNRNPA2B1P22626 353 aaKnown RBP11.87□□□□□ -0.51
USP3-220ENST00000561381 DGKAP23743 735 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 ACVRL1P37023 503 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 RECQLP46063 649 aaPredicted RBP11.87□□□□□ -0.51
USP3-220ENST00000561381 SERPINH1P50454 418 aaKnown RBP11.87□□□□□ -0.51
USP3-220ENST00000561381 DNA2P51530 1060 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 INSM1Q01101 510 aaPredicted RBP11.87□□□□□ -0.51
USP3-220ENST00000561381 SEMG2Q02383 582 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 GNA12Q03113 381 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 CDO1Q16878 200 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 C15orf59Q2T9L4 293 aaPredicted RBP11.87□□□□□ -0.51
USP3-220ENST00000561381 TMEM259Q4ZIN3 620 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 ZNF542PQ5EBM4 170 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 NEK5Q6P3R8 708 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 SLC22A18ASQ8N1D0 253 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 SLC30A5Q8TAD4 765 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 NXPE2Q96DL1 559 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 CALN1Q9BXU9 219 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 HDAC8Q9BY41 377 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 ZYG11BQ9C0D3 744 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 NUP62CLQ9H1M0 184 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 GANQ9H2C0 597 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 ATP13A1Q9HD20 1204 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 KLHL11Q9NVR0 708 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 CHMP5Q9NZZ3 219 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 NOCTQ9UK39 431 aaKnown RBP11.87□□□□□ -0.51
USP3-220ENST00000561381 PCDHGA10Q9Y5H3 936 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 AK5Q9Y6K8 562 aa11.87□□□□□ -0.51
USP3-220ENST00000561381 FASNP49327 2511 aaKnown RBP11.87□□□□□ -0.51
USP3-220ENST00000561381 FAM72CH0Y354 149 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 EPHB6O15197 1021 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 RAD51BO15315 384 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 PIAS2O75928 621 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 GIMD1P0DJR0 217 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 CDK4P11802 303 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 ADRB3P13945 408 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 ACP1P24666 158 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 ITPKBP27987 946 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 AKT2P31751 481 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 GKP32189 559 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 CCNHP51946 323 aaPredicted RBP11.86□□□□□ -0.51
USP3-220ENST00000561381 NEK3P51956 506 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 FMO1Q01740 532 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 ZNF211Q13398 564 aaPredicted RBP11.86□□□□□ -0.51
USP3-220ENST00000561381 ILKQ13418 452 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 CCDC14Q49A88 953 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 CARD16Q5EG05 197 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 FAM72AQ5TYM5 149 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 FAM72DQ6L9T8 149 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 RETSATQ6NUM9 610 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 ZNF783Q6ZMS7 281 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 KDM7AQ6ZMT4 941 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 Q6ZSR6 202 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 PARS2Q7L3T8 475 aaKnown RBP11.86□□□□□ -0.51
USP3-220ENST00000561381 ABI3BPQ7Z7G0 1075 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 FAM72BQ86X60 149 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 OR6K2Q8NGY2 324 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 OR4C6Q8NH72 309 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 JOSD2Q8TAC2 188 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 GPT2Q8TD30 523 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 RXFP2Q8WXD0 754 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 BMFQ96LC9 184 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 TM6SF2Q9BZW4 377 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 CEP44Q9C0F1 390 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 VPS16Q9H269 839 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 PPARGC1AQ9UBK2 798 aaKnown RBP11.86□□□□□ -0.51
USP3-220ENST00000561381 DACH1Q9UI36 760 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 NEU3Q9UQ49 428 aa11.86□□□□□ -0.51
USP3-220ENST00000561381 ITPR1Q14643 2758 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 POM121BA6NF01 834 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 PAK4O96013 591 aaPredicted RBP11.85□□□□□ -0.51
USP3-220ENST00000561381 CYP1A1P04798 512 aaPredicted RBP11.85□□□□□ -0.51
USP3-220ENST00000561381 MMP8P22894 467 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 ITGB7P26010 798 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 L1CAMP32004 1257 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 ADRA1BP35368 520 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 POLR2FP61218 127 aaKnown RBP11.85□□□□□ -0.51
USP3-220ENST00000561381 CDR2Q01850 454 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 CCDC15Q0P6D6 951 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 RTP5Q14D33 572 aa11.85□□□□□ -0.51
USP3-220ENST00000561381 ACAP1Q15027 740 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms