RNA–Protein interactions for RNA: ENST00000559433.5

LRRC28-214, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-214ENST00000559433 PEBP4Q96S96 227 aa12.83□□□□□ -0.36
LRRC28-214ENST00000559433 SNRNP25Q9BV90 132 aaKnown RBP12.83□□□□□ -0.36
LRRC28-214ENST00000559433 TM6SF2Q9BZW4 377 aa12.83□□□□□ -0.36
LRRC28-214ENST00000559433 KDM4CQ9H3R0 1056 aa12.83□□□□□ -0.36
LRRC28-214ENST00000559433 DHX35Q9H5Z1 703 aaKnown RBP12.83□□□□□ -0.36
LRRC28-214ENST00000559433 ZDHHC6Q9H6R6 413 aa12.83□□□□□ -0.36
LRRC28-214ENST00000559433 EBF2Q9HAK2 575 aa12.83□□□□□ -0.36
LRRC28-214ENST00000559433 FNDC3AQ9Y2H6 1198 aaKnown RBP12.83□□□□□ -0.36
LRRC28-214ENST00000559433 SNX11Q9Y5W9 270 aa12.83□□□□□ -0.36
LRRC28-214ENST00000559433 WASF2Q9Y6W5 498 aa12.83□□□□□ -0.36
LRRC28-214ENST00000559433 PCNX2A6NKB5 2137 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 KNL1Q8NG31 2342 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 SPAARA0A1B0GVQ0 90 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 ZSCAN5CA6NGD5 496 aaPredicted RBP12.82□□□□□ -0.36
LRRC28-214ENST00000559433 WASH4PA8MWX3 477 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 EIF3CLB5ME19 914 aaKnown RBP12.82□□□□□ -0.36
LRRC28-214ENST00000559433 C10orf142B7Z368 130 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 EEF2KO00418 725 aaKnown RBP12.82□□□□□ -0.36
LRRC28-214ENST00000559433 BUB1O43683 1085 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 DFNA5O60443 496 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 LEFTY1O75610 366 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 CD160O95971 181 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 PMLP29590 882 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 MIPP30301 263 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 MAT2AP31153 395 aaKnown RBP12.82□□□□□ -0.36
LRRC28-214ENST00000559433 CCNHP51946 323 aaPredicted RBP12.82□□□□□ -0.36
LRRC28-214ENST00000559433 TRIP6Q15654 476 aaKnown RBP12.82□□□□□ -0.36
LRRC28-214ENST00000559433 CA9Q16790 459 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 PARP15Q460N3 678 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 ERMARDQ5T6L9 678 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 TRIM69Q86WT6 500 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 NAXDQ8IW45 347 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 RYBPQ8N488 228 aaPredicted RBP12.82□□□□□ -0.36
LRRC28-214ENST00000559433 ARFGAP1Q8N6T3 406 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 RNF214Q8ND24 703 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 ISG20Q96AZ6 181 aaKnown RBP12.82□□□□□ -0.36
LRRC28-214ENST00000559433 HMCESQ96FZ2 354 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 SERAC1Q96JX3 654 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 EIF3CQ99613 913 aaKnown RBP12.82□□□□□ -0.36
LRRC28-214ENST00000559433 HEPHQ9BQS7 1158 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 THAP2Q9H0W7 228 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 NOL6Q9H6R4 1146 aaKnown RBP12.82□□□□□ -0.36
LRRC28-214ENST00000559433 PREBQ9HCU5 417 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 TM7SF3Q9NS93 570 aa12.82□□□□□ -0.36
LRRC28-214ENST00000559433 HECAQ9UBI9 543 aaPredicted RBP12.82□□□□□ -0.36
LRRC28-214ENST00000559433 A0A087X0T9 212 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 RASA4BC9J798 803 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 RNF103O00237 685 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 VILLO15195 856 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 DAPK3O43293 454 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 RASA4O43374 803 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 LATO43561 262 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 LRCH4O75427 683 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 TRIM16O95361 564 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 GSRP00390 522 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 FAM228BP0C875 321 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 ZNF883P0CG24 379 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 ITGB7P26010 798 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 NUDT1P36639 197 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 YBEYP58557 167 aaPredicted RBP12.81□□□□□ -0.36
LRRC28-214ENST00000559433 TAS2R38P59533 333 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 TRIM14Q14142 442 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 PPP6R3Q5H9R7 873 aaPredicted RBP12.81□□□□□ -0.36
LRRC28-214ENST00000559433 KCNT1Q5JUK3 1230 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 SPECC1LQ69YQ0 1117 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 NAPEPLDQ6IQ20 393 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 ERN2Q76MJ5 926 aaKnown RBP12.81□□□□□ -0.36
LRRC28-214ENST00000559433 UMODL1-AS1Q8N2C9 162 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 OR6K2Q8NGY2 324 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 RHBDD1Q8TEB9 315 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 CAMK1GQ96NX5 476 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 KCTD15Q96SI1 283 aaPredicted RBP12.81□□□□□ -0.36
LRRC28-214ENST00000559433 NCAPGQ9BPX3 1015 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 HDAC8Q9BY41 377 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 KLC2Q9H0B6 622 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 DONSONQ9NYP3 566 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 ARHGAP20Q9P2F6 1191 aa12.81□□□□□ -0.36
LRRC28-214ENST00000559433 TPRP12270 2363 aaKnown RBP12.8□□□□□ -0.36
LRRC28-214ENST00000559433 ANKRD36A6QL64 1941 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 TRPM6Q9BX84 2022 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 KRIT1O00522 736 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 KCNK3O14649 394 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 WNT9AO14904 365 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 MAGEC1O60732 1142 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 RNGTTO60942 597 aaKnown RBP12.8□□□□□ -0.36
LRRC28-214ENST00000559433 TMCC1O94876 653 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 WNT1P04628 370 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 CD38P28907 300 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 PCK1P35558 622 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 CTSKP43235 329 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 NEK3P51956 506 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 RHOAP61586 193 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 SNRPD1P62314 119 aaKnown RBP12.8□□□□□ -0.36
LRRC28-214ENST00000559433 SHC2P98077 582 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 SERINC3Q13530 473 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 STAT4Q14765 748 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 ACAP1Q15027 740 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 ZNF423Q2M1K9 1284 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 INAVAQ3KP66 663 aa12.8□□□□□ -0.36
LRRC28-214ENST00000559433 SETMARQ53H47 684 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms