RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 OMDQ99983 421 aa10.77□□□□□ -0.68
CUX1-217ENST00000558836 BTBD10Q9BSF8 475 aa10.77□□□□□ -0.68
CUX1-217ENST00000558836 TRIM62Q9BVG3 475 aa10.77□□□□□ -0.68
CUX1-217ENST00000558836 KIFC1Q9BW19 673 aa10.77□□□□□ -0.68
CUX1-217ENST00000558836 MARCH5Q9NX47 278 aa10.77□□□□□ -0.68
CUX1-217ENST00000558836 TMEM161AQ9NX61 479 aa10.77□□□□□ -0.68
CUX1-217ENST00000558836 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.77□□□□□ -0.68
CUX1-217ENST00000558836 ARHGEF37A1IGU5 675 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 MAGEB16A2A368 324 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 TBKBP1A7MCY6 615 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 ARVCFO00192 962 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 CCDC22O60826 627 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 DIAPH2O60879 1101 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 SELPP16109 830 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 ACVRL1P37023 503 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 PTPRCAPQ14761 206 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 PCID2Q5JVF3 399 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 FAM219BQ5XKK7 198 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 ZNF470Q6ECI4 717 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 TMCO2Q7Z6W1 182 aaPredicted RBP10.77□□□□□ -0.69
CUX1-217ENST00000558836 DEFB128Q7Z7B8 93 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 LINC00523Q86TU6 105 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 ZNF781Q8N8C0 355 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 CASD1Q96PB1 797 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 NDNQ99608 321 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 FBXO44Q9H4M3 255 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 NMRAL1Q9HBL8 299 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 SAR1AQ9NR31 198 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 LRFN2Q9ULH4 789 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 CDY1Q9Y6F8 540 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 MYLKQ15746 1914 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 MTMR11A4FU01 709 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 G3V2L1 256 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 KIF3CO14782 793 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 GSC2O15499 205 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 CACNG3O60359 315 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 ANXA9O76027 345 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 PEX11BO96011 259 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 PIRTP0C851 137 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 CD1EP15812 388 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 HOXC13P31276 330 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 SLC1A2P43004 574 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 ZNF135P52742 658 aaPredicted RBP10.77□□□□□ -0.69
CUX1-217ENST00000558836 PEX6Q13608 980 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 FUT10Q6P4F1 479 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 BEND5Q7L4P6 421 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 RNF135Q8IUD6 432 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 WDR75Q8IWA0 830 aaKnown RBP10.77□□□□□ -0.69
CUX1-217ENST00000558836 SHKBP1Q8TBC3 707 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 SCYL1Q96KG9 808 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 PPP1R12CQ9BZL4 782 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 ZYG11BQ9C0D3 744 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 WWP1Q9H0M0 922 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 MTF2Q9Y483 593 aaPredicted RBP10.77□□□□□ -0.69
CUX1-217ENST00000558836 KCTD3Q9Y597 815 aa10.77□□□□□ -0.69
CUX1-217ENST00000558836 PRRC2BQ5JSZ5 2229 aaKnown RBP10.76□□□□□ -0.69
CUX1-217ENST00000558836 INPPL1O15357 1258 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 SERPINE1P05121 402 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 CHRNGP07510 517 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 HOXD10P28358 340 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 NAB1Q13506 487 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 LZTR1Q8N653 840 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 MCUR1Q96AQ8 359 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 C8orf48Q96LL4 319 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 SP110Q9HB58 689 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.76□□□□□ -0.69
CUX1-217ENST00000558836 TLK1Q9UKI8 766 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 G3BP2Q9UN86 482 aaKnown RBP10.76□□□□□ -0.69
CUX1-217ENST00000558836 RUVBL2Q9Y230 463 aaKnown RBP10.76□□□□□ -0.69
CUX1-217ENST00000558836 SQORQ9Y6N5 450 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 A0A0D9SEW6 157 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 GOLGA8QA0A0J9YX86 632 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 GOLGA8OA6NCC3 632 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 OR51F1A6NGY5 319 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 GOLGA8NF8WBI6 632 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 IL1BP01584 269 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 CALB2P22676 271 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 OR1E1P30953 314 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 SLC8A1P32418 973 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 ADRA1AP35348 466 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 ARCN1P48444 511 aaKnown RBP10.76□□□□□ -0.69
CUX1-217ENST00000558836 SESN3P58005 492 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 ABCE1P61221 599 aaKnown RBP10.76□□□□□ -0.69
CUX1-217ENST00000558836 KHDC1Q4VXA5 237 aaKnown RBP10.76□□□□□ -0.69
CUX1-217ENST00000558836 MARC1Q5VT66 337 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 RANBP10Q6VN20 620 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 PTAR1Q7Z6K3 402 aaPredicted RBP10.76□□□□□ -0.69
CUX1-217ENST00000558836 EGFL6Q8IUX8 553 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 ZNF683Q8IZ20 524 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 PPHLN1Q8NEY8 458 aaKnown RBP10.76□□□□□ -0.69
CUX1-217ENST00000558836 PPP4R1Q8TF05 950 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 WDR60Q8WVS4 1066 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 FAM136AQ96C01 138 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 FUBP3Q96I24 572 aaKnown RBP eCLIP10.76□□□□□ -0.69
CUX1-217ENST00000558836 NUDCD1Q96RS6 583 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.76□□□□□ -0.69
CUX1-217ENST00000558836 LNPEPQ9UIQ6 1025 aa10.76□□□□□ -0.69
CUX1-217ENST00000558836 DOCK4Q8N1I0 1966 aa10.75□□□□□ -0.69
CUX1-217ENST00000558836 CASP8AP2Q9UKL3 1982 aa10.75□□□□□ -0.69
CUX1-217ENST00000558836 SCN5AQ14524 2016 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms