RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SCRN3Q0VDG4 424 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 TROAPQ12815 778 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 MERTKQ12866 999 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 MFSD13AQ14CX5 517 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 C12orf60Q5U649 245 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 METTL11BQ5VVY1 283 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 CDHR3Q6ZTQ4 885 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 FAM9CQ8IZT9 166 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 DSELQ8IZU8 1212 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 PHTF2Q8N3S3 785 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 FRS2Q8WU20 508 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 NKD2Q969F2 451 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-226ENST00000556825 DACH2Q96NX9 599 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 RBM14Q96PK6 669 aaKnown RBP13.99□□□□□ -0.17
SHMT2-226ENST00000556825 TTYH2Q9BSA4 534 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 LHPPQ9H008 270 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 SH3GLB2Q9NR46 395 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 SLC39A1Q9NY26 324 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 ZC3H7BQ9UGR2 993 aaKnown RBP13.99□□□□□ -0.17
SHMT2-226ENST00000556825 MKL2Q9ULH7 1088 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 ZNF98A6NK75 572 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 SERPINB2P05120 415 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 YBX3P16989 372 aaKnown RBP eCLIP13.99□□□□□ -0.177e-8■□□□□ 9
SHMT2-226ENST00000556825 NCF2P19878 526 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-226ENST00000556825 NR2F2P24468 414 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 GJC1P36383 396 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 ZNF76P36508 570 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 SERPINB10P48595 397 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 MAPKAPK2P49137 400 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 RGS7P49802 495 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 NUDT2P50583 147 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 ADCY7P51828 1080 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 KLF10Q13118 480 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 KRR1Q13601 381 aaKnown RBP13.99□□□□□ -0.17
SHMT2-226ENST00000556825 FAM26DQ5JW98 314 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 FAM209BQ5JX69 171 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 GARNL3Q5VVW2 1013 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 CHSY3Q70JA7 882 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 VANGL1Q8TAA9 524 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-226ENST00000556825 DHX33Q9H6R0 707 aaKnown RBP13.99□□□□□ -0.17
SHMT2-226ENST00000556825 CD320Q9NPF0 282 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 KCTD5Q9NXV2 234 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 PCDHA8Q9Y5H6 950 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 SNX13Q9Y5W8 968 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 BCORQ6W2J9 1755 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 PHLPP1O60346 1717 aa13.99□□□□□ -0.17
SHMT2-226ENST00000556825 COL16A1Q07092 1604 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-226ENST00000556825 TCRBV5S4A2TA0A5A2 114 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 DLGAP1O14490 977 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 SOCS2O14508 198 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 AIM2O14862 343 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 ZNF780AO75290 641 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-226ENST00000556825 PIAS1O75925 651 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 DDAH1O94760 285 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 RALBP11234 206 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 PTPN5P54829 565 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 ACTR2P61160 394 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 C1QBPQ07021 282 aaKnown RBP13.98□□□□□ -0.17
SHMT2-226ENST00000556825 DGUOKQ16854 277 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 ARCQ7LC44 396 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 UBQLNLQ8IYU4 475 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 LRRC71Q8N4P6 559 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 DNAJC19Q96DA6 116 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 MCRS1Q96EZ8 462 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 ZNF778Q96MU6 729 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 FGFBP2Q9BYJ0 223 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 ZC3H12CQ9C0D7 883 aaKnown RBP13.98□□□□□ -0.17
SHMT2-226ENST00000556825 PRDM8Q9NQV8 689 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 SIRT5Q9NXA8 310 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 IL37Q9NZH6 218 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 DPP7Q9UHL4 492 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 KCNE2Q9Y6J6 123 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 TJP1Q07157 1748 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 NUP188Q5SRE5 1749 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 TNS2Q63HR2 1409 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 SAGE2PA6NJ88 616 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 H3BMM5 538 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 FAM155BO75949 473 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 CALB1P05937 261 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 CYP2A7P20853 494 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 GLRA2P23416 452 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 IL12AP29459 219 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 SERPINB5P36952 375 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 PLA2G16P53816 162 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 PKNOX1P55347 436 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 OR2B6P58173 313 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 ALFQ53S48 1182 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 DCAF17Q5H9S7 520 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-226ENST00000556825 SLC16A12Q6ZSM3 486 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 ZNF767PQ75MW2 155 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 VN1R5Q7Z5H4 357 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 LINC00523Q86TU6 105 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 NOXA1Q86UR1 476 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 LGI2Q8N0V4 545 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 OR2T34Q8NGX1 318 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 PIGBQ92521 554 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 FAM149B1Q96BN6 582 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 DMRTB1Q96MA1 342 aa13.98□□□□□ -0.17
SHMT2-226ENST00000556825 ZSCAN10Q96SZ4 725 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-226ENST00000556825 PITHD1Q9GZP4 211 aaPredicted RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms