RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 ABCB4P21439 1286 aa3.46□□□□□ -1.86
SCFD1-218ENST00000556256 GRK5P34947 590 aa3.46□□□□□ -1.86
SCFD1-218ENST00000556256 HSPA7P48741 367 aa3.46□□□□□ -1.86
SCFD1-218ENST00000556256 CYP2J2P51589 502 aa3.46□□□□□ -1.86
SCFD1-218ENST00000556256 CTTNQ14247 550 aaKnown RBP3.46□□□□□ -1.86
SCFD1-218ENST00000556256 ARL13BQ3SXY8 428 aa3.46□□□□□ -1.86
SCFD1-218ENST00000556256 PLEKHO1Q53GL0 409 aaPredicted RBP3.46□□□□□ -1.86
SCFD1-218ENST00000556256 XKR9Q5GH70 373 aa3.46□□□□□ -1.86
SCFD1-218ENST00000556256 SLC30A9Q6PML9 568 aa3.46□□□□□ -1.86
SCFD1-218ENST00000556256 UNQ6126/PRO20091Q6UXV3 157 aa3.46□□□□□ -1.86
SCFD1-218ENST00000556256 MORC4Q8TE76 937 aa3.46□□□□□ -1.86
SCFD1-218ENST00000556256 PLEKHD1A6NEE1 506 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 P2RY10O00398 339 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 EXTL3O43909 919 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 EIF3JO75822 258 aaKnown RBP3.45□□□□□ -1.86
SCFD1-218ENST00000556256 RNF224P0DH78 156 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 EEF1GP26641 437 aaKnown RBP3.45□□□□□ -1.86
SCFD1-218ENST00000556256 CDKN1AP38936 164 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 SLC1A5Q15758 541 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 TUBB8Q3ZCM7 444 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 FOXL2NBQ6ZUU3 175 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 EPHX4Q8IUS5 362 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 SMC5Q8IY18 1101 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 ZDHHC23Q8IYP9 409 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 ENAHQ8N8S7 591 aaPredicted RBP3.45□□□□□ -1.86
SCFD1-218ENST00000556256 GLIS1Q8NBF1 620 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 CLEC4CQ8WTT0 213 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 SECTM1Q8WVN6 248 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 USP13Q92995 863 aaPredicted RBP3.45□□□□□ -1.86
SCFD1-218ENST00000556256 TMEM41AQ96HV5 264 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 FEM1CQ96JP0 617 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 CRB3Q9BUF7 120 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 STK33Q9BYT3 514 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 ZNF696Q9H7X3 374 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 PTPRHQ9HD43 1115 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 ARFGAP3Q9NP61 516 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 RGL1Q9NZL6 768 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 TRPC5Q9UL62 973 aaPredicted RBP3.45□□□□□ -1.86
SCFD1-218ENST00000556256 ZBTB1Q9Y2K1 713 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 PKP3Q9Y446 797 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 PCDHGB2Q9Y5G2 931 aa3.45□□□□□ -1.86
SCFD1-218ENST00000556256 COPG1Q9Y678 874 aaKnown RBP3.45□□□□□ -1.86
SCFD1-218ENST00000556256 A0A087WV62 115 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 A0A1B0GVM2 712 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 DYTNA2CJ06 578 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 EYA2O00167 538 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 CLDN7O95471 211 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 ZNF132P52740 706 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 TNFAIP2Q03169 654 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 CHAF1AQ13111 956 aaPredicted RBP3.44□□□□□ -1.86
SCFD1-218ENST00000556256 GRM4Q14833 912 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 FAM171A1Q5VUB5 890 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 TYW3Q6IPR3 259 aaKnown RBP3.44□□□□□ -1.86
SCFD1-218ENST00000556256 C1orf228Q6PIY5 440 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 POF1BQ8WVV4 589 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 EIF2AQ9BY44 585 aaKnown RBP3.44□□□□□ -1.86
SCFD1-218ENST00000556256 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.44□□□□□ -1.86
SCFD1-218ENST00000556256 CDH22Q9UJ99 828 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 CDC23Q9UJX2 597 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 TCF19Q9Y242 345 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 MAN2B2Q9Y2E5 1009 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 DTNAQ9Y4J8 743 aa3.44□□□□□ -1.86
SCFD1-218ENST00000556256 IGHV4OR15-8A0A075B7B6 117 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 C17orf102A2RUQ5 167 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 KDM4EB2RXH2 506 aaPredicted RBP3.43□□□□□ -1.86
SCFD1-218ENST00000556256 HNRNPDLO14979 420 aaKnown RBP3.43□□□□□ -1.86
SCFD1-218ENST00000556256 SLC22A3O75751 556 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 TCEA3O75764 348 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 NTSR2O95665 410 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 TRAPPC10P48553 1259 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 FAM3BP58499 235 aaPredicted RBP3.43□□□□□ -1.86
SCFD1-218ENST00000556256 GRAMD1BQ3KR37 738 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 C5orf22Q49AR2 442 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 SETMARQ53H47 684 aaPredicted RBP3.43□□□□□ -1.86
SCFD1-218ENST00000556256 EXOC8Q8IYI6 725 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 TXLNBQ8N3L3 684 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 VPS37AQ8NEZ2 397 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 ZNF566Q969W8 418 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 C18orf8Q96DM3 657 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 REXO5Q96IC2 774 aaKnown RBP3.43□□□□□ -1.86
SCFD1-218ENST00000556256 PSMD1Q99460 953 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 EPS8L2Q9H6S3 715 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 Q9N2J8 555 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 HELLSQ9NRZ9 838 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 TM7SF3Q9NS93 570 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 SEL1LQ9UBV2 794 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 LRCH1Q9Y2L9 728 aa3.43□□□□□ -1.86
SCFD1-218ENST00000556256 TBC1D3DA0A087WVF3 549 aa3.42□□□□□ -1.86
SCFD1-218ENST00000556256 TBC1D3IA0A087WXS9 549 aa3.42□□□□□ -1.86
SCFD1-218ENST00000556256 TBC1D3EA0A087X179 549 aa3.42□□□□□ -1.86
SCFD1-218ENST00000556256 TBC1D3KA0A087X1G2 549 aa3.42□□□□□ -1.86
SCFD1-218ENST00000556256 FAM234BA2RU67 622 aa3.42□□□□□ -1.86
SCFD1-218ENST00000556256 TBC1D3BA6NDS4 549 aa3.42□□□□□ -1.86
SCFD1-218ENST00000556256 TBC1D3FA6NER0 549 aaPredicted RBP3.42□□□□□ -1.86
SCFD1-218ENST00000556256 GOLGA6L3A6NEY3 463 aa3.42□□□□□ -1.86
SCFD1-218ENST00000556256 TBC1D3LB9A6J9 549 aa3.42□□□□□ -1.86
SCFD1-218ENST00000556256 F5H423 210 aaPredicted RBP3.42□□□□□ -1.86
SCFD1-218ENST00000556256 TBC1D3HP0C7X1 549 aa3.42□□□□□ -1.86
SCFD1-218ENST00000556256 HOXB9P17482 250 aaPredicted RBP3.42□□□□□ -1.86
SCFD1-218ENST00000556256 TECP42680 631 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms