RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 A0A087WV48 116 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 IGHV1OR15-9A0A0B4J2B8 117 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 A8MXQ7 604 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 GABRDO14764 452 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 LRCH4O75427 683 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 SPAG6O75602 509 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 KAT7O95251 611 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 ACSL3O95573 720 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 SHBGP04278 402 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 CHN1P15882 459 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 GABRG2P18507 467 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 DPP6P42658 865 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 ARSEP51690 589 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 ZNF143P52747 638 aaPredicted RBP11.4□□□□□ -0.58
SHMT2-216ENST00000554975 ARL4CP56559 192 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 ITIH4Q14624 930 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 PDK2Q15119 407 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 MDH1BQ5I0G3 518 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 FAM102AQ5T9C2 384 aaPredicted RBP11.4□□□□□ -0.58
SHMT2-216ENST00000554975 C4orf22Q6V702 233 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 TMPRSS7Q7RTY8 843 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 PPIL6Q8IXY8 311 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 PHTF2Q8N3S3 785 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 ATP11CQ8NB49 1132 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 CCDC197Q8NCU1 140 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 STK32AQ8WU08 396 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 SLC39A7Q92504 469 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 RAPGEF5Q92565 580 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 ARHGEF2Q92974 986 aaKnown RBP11.4□□□□□ -0.58
SHMT2-216ENST00000554975 MYLPFQ96A32 169 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 HAUS1Q96CS2 278 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 TRMT2BQ96GJ1 504 aaKnown RBP11.4□□□□□ -0.58
SHMT2-216ENST00000554975 SGSM3Q96HU1 749 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 CABS1Q96KC9 395 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 MYRFLQ96LU7 910 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 HSPA12BQ96MM6 686 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 RBM15Q96T37 977 aaKnown RBP eCLIP11.4□□□□□ -0.58
SHMT2-216ENST00000554975 PRDM16Q9HAZ2 1276 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 PCOLCE2Q9UKZ9 415 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 ARHGAP26Q9UNA1 814 aa11.4□□□□□ -0.58
SHMT2-216ENST00000554975 SPTA1P02549 2419 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.39□□□□□ -0.59
SHMT2-216ENST00000554975 EXOC1LA0A1B0GW35 172 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 TRABD2BA6NFA1 517 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 SMIM23A6NLE4 172 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 LEFTY2O00292 366 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 PRPSAP2O60256 369 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 FSBPO95073 299 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 TCF3P15923 654 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 TGM2P21980 687 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 MAOBP27338 520 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 ITPKBP27987 946 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 MAGEA4P43358 317 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 VPS41P49754 854 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 CDH8P55286 799 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 GRIK2Q13002 908 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 GPS1Q13098 491 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 SLC14A1Q13336 389 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 CAMK2BQ13554 666 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 DHCR24Q15392 516 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 MAPRE1Q15691 268 aaKnown RBP11.39□□□□□ -0.59
SHMT2-216ENST00000554975 KLHL38Q2WGJ6 581 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 C2CD6Q53TS8 623 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 EOGTQ5NDL2 527 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 KAZNQ674X7 775 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 TTC19Q6DKK2 380 aaPredicted RBP11.39□□□□□ -0.59
SHMT2-216ENST00000554975 FOXR1Q6PIV2 292 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 PHLDB2Q86SQ0 1253 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 GLRX5Q86SX6 157 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 PIP4K2CQ8TBX8 421 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.39□□□□□ -0.59
SHMT2-216ENST00000554975 UBL7Q96S82 380 aaPredicted RBP11.39□□□□□ -0.59
SHMT2-216ENST00000554975 CPXM1Q96SM3 734 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 PKMYT1Q99640 499 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 HERPUD2Q9BSE4 406 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 ELOVL4Q9GZR5 314 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 IL21RQ9HBE5 538 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 CRTAC1Q9NQ79 661 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 UXTQ9UBK9 157 aaPredicted RBP11.39□□□□□ -0.59
SHMT2-216ENST00000554975 SLC24A2Q9UI40 661 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 DNPEPQ9ULA0 475 aa11.39□□□□□ -0.59
SHMT2-216ENST00000554975 APOBEC2Q9Y235 224 aaKnown RBP11.39□□□□□ -0.59
SHMT2-216ENST00000554975 FAM149AA5PLN7 773 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 F8VP50 259 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 H0YHG0 523 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 APODP05090 189 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 SYPP08247 313 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 ATXN1LP0C7T5 689 aaKnown RBP11.38□□□□□ -0.59
SHMT2-216ENST00000554975 HDCP19113 662 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 BDNFP23560 247 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 KDELR1P24390 212 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 STIP1P31948 543 aaKnown RBP11.38□□□□□ -0.59
SHMT2-216ENST00000554975 RFC1P35251 1148 aaPredicted RBP11.38□□□□□ -0.59
SHMT2-216ENST00000554975 CHKAP35790 457 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 GRIK1P39086 918 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 WASP42768 502 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 ACADSBP45954 432 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 SLC18A1P54219 525 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 BCAT1P54687 386 aa11.38□□□□□ -0.59
SHMT2-216ENST00000554975 OGDHQ02218 1023 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms