RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 GALNT16Q8N428 558 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 USP38Q8NB14 1042 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 ADPRHL1Q8NDY3 354 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 LINS1Q8NG48 757 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 ARRDC3Q96B67 414 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 ZNF845Q96IR2 970 aaPredicted RBP1.68□□□□□ -2.14
PRPF39-208ENST00000554785 GPR78Q96P69 363 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 FCRL4Q96PJ5 515 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 SENP7Q9BQF6 1050 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 HTATIP2Q9BUP3 242 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 TRIM2Q9C040 744 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 NUAK2Q9H093 628 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 RMI1Q9H9A7 625 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 SFXN1Q9H9B4 322 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 ARL8BQ9NVJ2 186 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 GGA3Q9NZ52 723 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 PI4KBQ9UBF8 816 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 GJD2Q9UKL4 321 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 DNAJC16Q9Y2G8 782 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 CRYL1Q9Y2S2 319 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 SIRT4Q9Y6E7 314 aaPredicted RBP1.68□□□□□ -2.14
PRPF39-208ENST00000554785 BRCA1P38398 1863 aaKnown RBP1.68□□□□□ -2.14
PRPF39-208ENST00000554785 LY75O60449 1722 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 TOGARAM1Q9Y4F4 1720 aa1.68□□□□□ -2.14
PRPF39-208ENST00000554785 MAP3K5Q99683 1374 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 WDFY4Q6ZS81 3184 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 A0A0G2JLW4 131 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 A0A1B0GVC2 190 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 TMEM232C9JQI7 657 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 EYA2O00167 538 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 GRM8O00222 908 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ADAM10O14672 748 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 HOXC11O43248 304 aaPredicted RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 TSPAN3O60637 253 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 BCAR3O75815 825 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ENO1P06733 434 aaKnown RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 RFPL3SP0C7P2 107 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ACP5P13686 325 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 CPA1P15085 419 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 XBP1P17861 261 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 PNPLA4P41247 253 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 NR4A2P43354 598 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 CCR5P51681 352 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 SHC2P98077 582 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 CHRNDQ07001 517 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 CDK18Q07002 472 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 DMWDQ09019 674 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 TRPC3Q13507 836 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 KPNB1Q14974 876 aaKnown RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 CBWD5Q5RIA9 395 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 MAP3K21Q5TCX8 1036 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 KIAA1324Q6UXG2 1013 aaKnown RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 CRELD2Q6UXH1 353 aaPredicted RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 BBS12Q6ZW61 710 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 TMTC1Q8IUR5 882 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ADGRF3Q8IZF5 1079 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ANKRD44Q8N8A2 993 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 IL17REQ8NFR9 667 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 PNISRQ8TF01 805 aaKnown RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 CELF1Q92879 486 aaKnown RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 RBM17Q96I25 401 aaKnown RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 REEP2Q9BRK0 252 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ABHD14AQ9BUJ0 271 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 EFHD1Q9BUP0 239 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ARHGAP39Q9C0H5 1083 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 CLPBQ9H078 707 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 OSBPL5Q9H0X9 879 aaPredicted RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 WASH6PQ9NQA3 447 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 TMEM160Q9NX00 188 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 MTMR4Q9NYA4 1195 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 IFT80Q9P2H3 777 aaPredicted RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ANAPC4Q9UJX5 808 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 SLC13A4Q9UKG4 626 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 AFG3L2Q9Y4W6 797 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 QSER1Q2KHR3 1735 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ABCC6O95255 1503 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 USP34Q70CQ2 3546 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 UBR3Q6ZT12 1888 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ACEP12821 1306 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 VWA3AA6NCI4 1184 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 E5RJQ4 531 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 DSCR3O14972 297 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 KLK10O43240 276 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ANP32CO43423 234 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 WDHD1O75717 1129 aaPredicted RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 RNF8O76064 485 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 CNTN5O94779 1100 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 SGPL1O95470 568 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 BMP15O95972 392 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 CSF1P09603 554 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 ALDOCP09972 364 aaKnown RBP1.67□□□□□ -2.14
PRPF39-208ENST00000554785 TNNT1P13805 278 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 CD53P19397 219 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 TGM2P21980 687 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 PRPH2P23942 346 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 TACR3P29371 465 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 IDUAP35475 653 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 VAMP2P63027 116 aa1.67□□□□□ -2.14
PRPF39-208ENST00000554785 TBX2Q13207 712 aaPredicted RBP1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms