RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SUN2Q9UH99 717 aa21.55■■□□□ 1.04
VPS29-206ENST00000549578 CUL9Q8IWT3 2517 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 MUSKO15146 869 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 SYNCRIPO60506 623 aaKnown RBP21.54■■□□□ 1.04
VPS29-206ENST00000549578 JCHAINP01591 159 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 MAGEA9P43362 315 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 RENBPP51606 427 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 IFI35P80217 286 aaPredicted RBP21.54■■□□□ 1.04
VPS29-206ENST00000549578 STARD3Q14849 445 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 CRY1Q16526 586 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 HEATR6Q6AI08 1181 aaKnown RBP21.54■■□□□ 1.04
VPS29-206ENST00000549578 PGBD5Q8N414 524 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 TEX26Q8N6G2 289 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 OR2A12Q8NGT7 310 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 HTR3CQ8WXA8 447 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 NT5MQ9NPB1 228 aa21.54■■□□□ 1.04
VPS29-206ENST00000549578 RBM22Q9NW64 420 aaKnown RBP eCLIP21.54■■□□□ 1.042e-8■□□□□ 9.5
VPS29-206ENST00000549578 ESPNB1AK53 854 aa21.53■■□□□ 1.04
VPS29-206ENST00000549578 RGRP47804 291 aa21.53■■□□□ 1.04
VPS29-206ENST00000549578 NRLP54845 237 aa21.53■■□□□ 1.04
VPS29-206ENST00000549578 CAMK2GQ13555 558 aaPredicted RBP21.53■■□□□ 1.04
VPS29-206ENST00000549578 CCNG2Q16589 344 aa21.53■■□□□ 1.04
VPS29-206ENST00000549578 STK40Q8N2I9 435 aa21.53■■□□□ 1.04
VPS29-206ENST00000549578 OR6K2Q8NGY2 324 aa21.53■■□□□ 1.04
VPS29-206ENST00000549578 PSKH2Q96QS6 385 aa21.53■■□□□ 1.04
VPS29-206ENST00000549578 IL12RB2Q99665 862 aa21.53■■□□□ 1.04
VPS29-206ENST00000549578 FRMD8P1Q9BZ68 369 aaPredicted RBP21.53■■□□□ 1.04
VPS29-206ENST00000549578 CD248Q9HCU0 757 aa21.53■■□□□ 1.04
VPS29-206ENST00000549578 SPATA6Q9NWH7 488 aaPredicted RBP21.53■■□□□ 1.04
VPS29-206ENST00000549578 TTLL3Q9Y4R7 772 aa21.53■■□□□ 1.04
VPS29-206ENST00000549578 BCLAF3A2AJT9 711 aaKnown RBP21.52■■□□□ 1.04
VPS29-206ENST00000549578 TARSL2A2RTX5 802 aaKnown RBP21.52■■□□□ 1.04
VPS29-206ENST00000549578 RNF103O00237 685 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 PDE2AO00408 941 aaPredicted RBP21.52■■□□□ 1.04
VPS29-206ENST00000549578 KRIT1O00522 736 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 KCNN4O15554 427 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 MAXP61244 160 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 SATB1Q01826 763 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 WASHC5Q12768 1159 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 BYSLQ13895 437 aaKnown RBP21.52■■□□□ 1.04
VPS29-206ENST00000549578 OASLQ15646 514 aaKnown RBP21.52■■□□□ 1.04
VPS29-206ENST00000549578 CARD16Q5EG05 197 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 DPY19L3Q6ZPD9 716 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 BBS5Q8N3I7 341 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 RYBPQ8N488 228 aaPredicted RBP21.52■■□□□ 1.04
VPS29-206ENST00000549578 CHST14Q8NCH0 376 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 OR2AP1Q8NGE2 309 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 NKD2Q969F2 451 aaPredicted RBP21.52■■□□□ 1.04
VPS29-206ENST00000549578 TMEM121Q9BTD3 319 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 IER2Q9BTL4 223 aa21.52■■□□□ 1.04
VPS29-206ENST00000549578 GJB3O75712 270 aa21.51■■□□□ 1.03
VPS29-206ENST00000549578 NEBLO76041 1014 aa21.51■■□□□ 1.03
VPS29-206ENST00000549578 URI1O94763 535 aaPredicted RBP21.51■■□□□ 1.03
VPS29-206ENST00000549578 IGSF6O95976 241 aa21.51■■□□□ 1.03
VPS29-206ENST00000549578 HLA-DQB2P05538 268 aa21.51■■□□□ 1.03
VPS29-206ENST00000549578 PTPN3P26045 913 aa21.51■■□□□ 1.03
VPS29-206ENST00000549578 RECQLP46063 649 aaPredicted RBP21.51■■□□□ 1.03
VPS29-206ENST00000549578 CCNHP51946 323 aaPredicted RBP21.51■■□□□ 1.03
VPS29-206ENST00000549578 SNRPD1P62314 119 aaKnown RBP21.51■■□□□ 1.03
VPS29-206ENST00000549578 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.51■■□□□ 1.03
VPS29-206ENST00000549578 CNTD1Q8N815 330 aa21.51■■□□□ 1.03
VPS29-206ENST00000549578 GDAP1L1Q96MZ0 367 aa21.51■■□□□ 1.03
VPS29-206ENST00000549578 AGAP3Q96P47 875 aa21.51■■□□□ 1.03
VPS29-206ENST00000549578 HHIPQ96QV1 700 aa21.51■■□□□ 1.03
VPS29-206ENST00000549578 MGME1Q9BQP7 344 aa21.51■■□□□ 1.03
VPS29-206ENST00000549578 USP29Q9HBJ7 922 aa21.51■■□□□ 1.03
VPS29-206ENST00000549578 TCRBV21S2A2A0A5A6 115 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 TTC24A2A3L6 582 aaPredicted RBP21.5■■□□□ 1.03
VPS29-206ENST00000549578 MTSS1O43312 755 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 ZNF500O60304 480 aaPredicted RBP21.5■■□□□ 1.03
VPS29-206ENST00000549578 GSRP00390 522 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 GKP32189 559 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 PAFAH1B1P43034 410 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 DGKEP52429 567 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 ELAVL3Q14576 367 aaKnown RBP21.5■■□□□ 1.03
VPS29-206ENST00000549578 CACUL1Q86Y37 369 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 FAM71DQ8N9W8 422 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 KIF18AQ8NI77 898 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 CCDC114Q96M63 670 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 SLC6A17Q9H1V8 727 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 HOMER3Q9NSC5 361 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 RNF14Q9UBS8 474 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 EVLQ9UI08 416 aaPredicted RBP21.5■■□□□ 1.03
VPS29-206ENST00000549578 ZNF148Q9UQR1 794 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 GOLGA6L10A0A0M3HER8 536 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 INSIG1O15503 277 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 AVPR2P30518 371 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 KCNJ1P48048 391 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 CXCL12P48061 93 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 COPAP53621 1224 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 GDF10P55107 478 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 ITKQ08881 620 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 TEX44Q53QW1 395 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 DRICH1Q6PGQ1 229 aaPredicted RBP21.5■■□□□ 1.03
VPS29-206ENST00000549578 ZNF567Q8N184 647 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 OR2T3Q8NH03 318 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 GRIN3AQ8TCU5 1115 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 OR8D1Q8WZ84 308 aa21.5■■□□□ 1.03
VPS29-206ENST00000549578 MAGOHBQ96A72 148 aaKnown RBP21.5■■□□□ 1.03
VPS29-206ENST00000549578 FAM129BQ96TA1 746 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms