RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 PCDH12Q9NPG4 1184 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 FAM114A2Q9NRY5 505 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 RAD18Q9NS91 495 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 ZDHHC18Q9NUE0 388 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 ARGLU1Q9NWB6 273 aaPredicted RBP8.66□□□□□ -1.02
VPS29-203ENST00000546588 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS29-203ENST00000546588 GRHL1Q9NZI5 618 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 WHRNQ9P202 907 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 ZNF212Q9UDV6 495 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS29-203ENST00000546588 ZMYM5Q9UJ78 669 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 RASAL2Q9UJF2 1139 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 PRKAB1Q9Y478 270 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 V9GYY5 206 aaPredicted RBP8.66□□□□□ -1.02
VPS29-203ENST00000546588 MYLKQ15746 1914 aa8.66□□□□□ -1.02
VPS29-203ENST00000546588 ANKRD36A6QL64 1941 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 HACD1B0YJ81 288 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 NDC80O14777 642 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 APOL1O14791 398 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 NCAM2O15394 837 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 TTI1O43156 1089 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 TLR5O60602 858 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 DNAJA2O60884 412 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 SOAT2O75908 522 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 FGF19O95750 216 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 GAS8O95995 478 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 GLUD1P00367 558 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 CA3P07451 260 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 HNRNPA1P09651 372 aaKnown RBP eCLIP8.65□□□□□ -1.02
VPS29-203ENST00000546588 MYBL2P10244 700 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 RARGP13631 454 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 NME1P15531 152 aaKnown RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 PECAM1P16284 738 aaPredicted RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 GOT1P17174 413 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 NAT1P18440 290 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 STIP1P31948 543 aaKnown RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 ARL4AP40617 200 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 MAGEA6P43360 314 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 ALDH1A3P47895 512 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 EPHB3P54753 998 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 MLLT6P55198 1093 aaPredicted RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 TNK2Q07912 1038 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 TWF1Q12792 350 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 PRKD1Q15139 912 aaPredicted RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 MAP9Q49MG5 647 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 SDHAF4Q5VUM1 108 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 NUGGCQ68CJ6 796 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 FAM109BQ6ICB4 259 aaPredicted RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 RHBDF2Q6PJF5 856 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 C4orf22Q6V702 233 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 BZW1Q7L1Q6 419 aaKnown RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 NLRP14Q86W24 1093 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 KLHL7Q8IXQ5 586 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 LZTR1Q8N653 840 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 CCDC89Q8N998 374 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 LEMD2Q8NC56 503 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 VPS37AQ8NEZ2 397 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 ST13P5Q8NFI4 369 aaPredicted RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 ART4Q93070 314 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 TP53INP1Q96A56 240 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 ACSF2Q96CM8 615 aaPredicted RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 HDAC11Q96DB2 347 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 BTN2A3PQ96KV6 586 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 HEMGNQ9BXL5 484 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 CALN1Q9BXU9 219 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 TXLNGYQ9BZA5 131 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 NRSN2Q9GZP1 204 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 KLC2Q9H0B6 622 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 BRD8Q9H0E9 1235 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 TKTL2Q9H0I9 626 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 DHX35Q9H5Z1 703 aaKnown RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 CYP4F11Q9HBI6 524 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 USP29Q9HBJ7 922 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 ZDHHC7Q9NXF8 308 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 OR12D3Q9UGF7 316 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 DNPEPQ9ULA0 475 aa8.65□□□□□ -1.02
VPS29-203ENST00000546588 YBX2Q9Y2T7 364 aaKnown RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 UTP11Q9Y3A2 253 aaKnown RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 ZNF106Q9H2Y7 1883 aaKnown RBP8.65□□□□□ -1.02
VPS29-203ENST00000546588 MUC22E2RYF6 1773 aaPredicted RBP8.64□□□□□ -1.03
VPS29-203ENST00000546588 COL4A2P08572 1712 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 CXorf51AA0A1B0GTR3 108 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.64□□□□□ -1.03
VPS29-203ENST00000546588 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.64□□□□□ -1.03
VPS29-203ENST00000546588 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.64□□□□□ -1.03
VPS29-203ENST00000546588 ZSCAN5CA6NGD5 496 aaPredicted RBP8.64□□□□□ -1.03
VPS29-203ENST00000546588 DRGXA6NNA5 263 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 HIDE1A8MVS5 230 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 FAM72CH0Y354 149 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 MAP2K7O14733 419 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 LRIG2O94898 1065 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 SEC31AO94979 1220 aaKnown RBP8.64□□□□□ -1.03
VPS29-203ENST00000546588 ASMTLO95671 621 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 RHOXF2BP0C7M4 288 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 DDX6P26196 483 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS29-203ENST00000546588 SERPINB6P35237 376 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 GJC1P36383 396 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 RGS19P49795 217 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 ARPP19P56211 112 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 SLC7A9P82251 487 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms