RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 DACT2Q5SW24 774 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TRIQKQ629K1 86 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TXNRD3Q86VQ6 643 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 KCNMB4Q86W47 210 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 C8orf59Q8N0T1 100 aaPredicted RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 IPMKQ8NFU5 416 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 FAM172AQ8WUF8 416 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 HTR3CQ8WXA8 447 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 FAM120BQ96EK7 910 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 SERHL2Q9H4I8 314 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 SERHLQ9NQF3 203 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ABCC13Q9NSE7 274 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 VPS51Q9UID3 782 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 SNX6Q9UNH7 406 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 SIGLEC16A6NMB1 481 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 TAF4O00268 1085 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 PHGDHO43175 533 aaKnown RBP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 IGSF6O95976 241 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 CCR1P32246 355 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 PSMC6P62333 389 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF844Q08AG5 666 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 SF3A3Q12874 501 aaKnown RBP eCLIP7.92□□□□□ -1.14
VPS13D-211ENST00000543710 AVL9Q8NBF6 648 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 IRGQQ8WZA9 623 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 FBXO28Q9NVF7 368 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 DNAJB4Q9UDY4 337 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF180Q9UJW8 692 aa7.92□□□□□ -1.14
VPS13D-211ENST00000543710 MRC1P22897 1456 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 LYPLA2O95372 231 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ITGB3P05106 788 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 NCAM1P13591 858 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 CDC42P60953 191 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 SP2Q02086 613 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 RETSATQ6NUM9 610 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 SERPINA13PQ6UXR4 307 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 IZUMO2Q6UXV1 221 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF571Q7Z3V5 609 aaPredicted RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 PIK3C3Q8NEB9 887 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 PHOSPHO2Q8TCD6 241 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 BADQ92934 168 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 IDI2Q9BXS1 227 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ANGPT4Q9Y264 503 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 GSTK1Q9Y2Q3 226 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 SAGE2PA6NJ88 616 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 NPTX2P47972 431 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 PER3P56645 1201 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ELF3P78545 371 aaPredicted RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 PGM5Q15124 567 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 C6orf10Q5SRN2 563 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 MROH9Q5TGP6 573 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ABRAXAS1Q6UWZ7 409 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 COLGALT1Q8NBJ5 622 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 OR6Y1Q8NGX8 325 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 SNIP1Q8TAD8 396 aaKnown RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 NR4A3Q92570 626 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ZBTB9Q96C00 473 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 DGCR14Q96DF8 476 aaKnown RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 NSMCE2Q96MF7 247 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 TMEM79Q9BSE2 394 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 KLHL31Q9H511 634 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 MAGEL2Q9UJ55 1249 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 LEF1Q9UJU2 399 aaPredicted RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ARIH1Q9Y4X5 557 aaPredicted RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 A6NCN8 305 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 UBXN8O00124 270 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 PEX12O00623 359 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 CASRP41180 1078 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 POLR2LP62875 67 aaKnown RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 TUBA4AP68366 448 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 LAPTM5Q13571 262 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 CATSPERGQ6ZRH7 1159 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 CCDC33Q8N5R6 958 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 FNIP1Q8TF40 1166 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 RIT1Q92963 219 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 KLHL5Q96PQ7 755 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 MRPL57Q9BQC6 102 aaKnown RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 FICDQ9BVA6 458 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 OSBPL10Q9BXB5 764 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 RHOBTB2Q9BYZ6 727 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 LHX5Q9H2C1 402 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ETAA1Q9NY74 926 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ANAPC2Q9UJX6 822 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 NAALADL1Q9UQQ1 740 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ONECUT3O60422 494 aaPredicted RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 MTA2O94776 668 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 FAM163BP0C2L3 166 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 JMJD7P0C870 316 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 UBTFL6P0CB48 400 aaPredicted RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 CD44P16070 742 aaKnown RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF23P17027 643 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 GSTM5P46439 218 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ACLYP53396 1101 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 OLR1P78380 273 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ITGB3BPQ13352 177 aaPredicted RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 FASTKQ14296 549 aaKnown RBP7.91□□□□□ -1.14
VPS13D-211ENST00000543710 NTRK3Q16288 839 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 MFSD5Q6N075 450 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF852Q6ZMS4 543 aa7.91□□□□□ -1.14
VPS13D-211ENST00000543710 ZBTB49Q6ZSB9 765 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms