RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 HAUS2Q9NVX0 235 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 AMACRQ9UHK6 382 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 BCLAF3A2AJT9 711 aaKnown RBP17.4■□□□□ 0.38
LIG1-204ENST00000542460 LIASO43766 372 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 SIN3BO75182 1162 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 NEBLO76041 1014 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 GSRP00390 522 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 JCHAINP01591 159 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 VAV1P15498 845 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 HSPA9P38646 679 aaKnown RBP17.4■□□□□ 0.38
LIG1-204ENST00000542460 PLA2G5P39877 138 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 DGKEP52429 567 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 SNRPD1P62314 119 aaKnown RBP17.4■□□□□ 0.38
LIG1-204ENST00000542460 NSUN2Q08J23 767 aaKnown RBP eCLIP17.4■□□□□ 0.38
LIG1-204ENST00000542460 TMEM92Q6UXU6 159 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 TSEN2Q8NCE0 465 aaKnown RBP17.4■□□□□ 0.38
LIG1-204ENST00000542460 OR2AP1Q8NGE2 309 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 OR2A12Q8NGT7 310 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 ATG4AQ8WYN0 398 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 ZNF592Q92610 1267 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 CAPZA3Q96KX2 299 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 IL12RB2Q99665 862 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 FBRSQ9HAH7 460 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 POLMQ9NP87 494 aaPredicted RBP17.4■□□□□ 0.38
LIG1-204ENST00000542460 RBM22Q9NW64 420 aaKnown RBP eCLIP17.4■□□□□ 0.38
LIG1-204ENST00000542460 SEPT10Q9P0V9 454 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 DNPEPQ9ULA0 475 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 FARP1Q9Y4F1 1045 aaPredicted RBP17.4■□□□□ 0.38
LIG1-204ENST00000542460 WDFY4Q6ZS81 3184 aa17.4■□□□□ 0.38
LIG1-204ENST00000542460 NYNRINQ9P2P1 1898 aaKnown RBP17.39■□□□□ 0.37
LIG1-204ENST00000542460 KRIT1O00522 736 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 BNIP3LO60238 219 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 RBL1P28749 1068 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 AVPR2P30518 371 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 PAFAH1B1P43034 410 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 CXCL12P48061 93 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 CCR3P51677 355 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 BYSLQ13895 437 aaKnown RBP17.39■□□□□ 0.37
LIG1-204ENST00000542460 ELAVL3Q14576 367 aaKnown RBP17.39■□□□□ 0.37
LIG1-204ENST00000542460 KIAA1211LQ6NV74 962 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 DRICH1Q6PGQ1 229 aaPredicted RBP17.39■□□□□ 0.37
LIG1-204ENST00000542460 NKD2Q969F2 451 aaPredicted RBP17.39■□□□□ 0.37
LIG1-204ENST00000542460 GDAP1L1Q96MZ0 367 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 VAT1Q99536 393 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 TM6SF2Q9BZW4 377 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 CD248Q9HCU0 757 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 POLR3BQ9NW08 1133 aaPredicted RBP17.39■□□□□ 0.37
LIG1-204ENST00000542460 SPATA6Q9NWH7 488 aaPredicted RBP17.39■□□□□ 0.37
LIG1-204ENST00000542460 C2orf42Q9NWW7 574 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 SMARCAL1Q9NZC9 954 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 LHX3Q9UBR4 397 aa17.39■□□□□ 0.37
LIG1-204ENST00000542460 ARIH1Q9Y4X5 557 aaPredicted RBP17.39■□□□□ 0.37
LIG1-204ENST00000542460 MUC22E2RYF6 1773 aaPredicted RBP17.39■□□□□ 0.37
LIG1-204ENST00000542460 ZBTB24O43167 697 aaPredicted RBP17.38■□□□□ 0.37
LIG1-204ENST00000542460 IGSF6O95976 241 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 CSNK1DP48730 415 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 ZBTB17Q13105 803 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 TEX44Q53QW1 395 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 DPY19L3Q6ZPD9 716 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 PRELID2Q8N945 189 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 OR2T3Q8NH03 318 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 KIF18AQ8NI77 898 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 AP1M1Q9BXS5 423 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 C10orf88Q9H8K7 445 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 USP29Q9HBJ7 922 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 NT5MQ9NPB1 228 aa17.38■□□□□ 0.37
LIG1-204ENST00000542460 HECAQ9UBI9 543 aaPredicted RBP17.38■□□□□ 0.37
LIG1-204ENST00000542460 GOLGA6L10A0A0M3HER8 536 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 CFAP69A5D8W1 941 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 ESPNB1AK53 854 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 MUSKO15146 869 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 ALOX15BO15296 676 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 KCNN4O15554 427 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 RNASEH1O60930 286 aaKnown RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 STK10O94804 968 aaKnown RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 PAPSS2O95340 614 aaPredicted RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 POP4O95707 220 aaKnown RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 PTPN3P26045 913 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 STIP1P31948 543 aaKnown RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 CCNHP51946 323 aaPredicted RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 SATB1Q01826 763 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 WASHC5Q12768 1159 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 SNX1Q13596 522 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 OASLQ15646 514 aaKnown RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 MYLK3Q32MK0 819 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 ATXN7L2Q5T6C5 722 aaPredicted RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 DSG4Q86SJ6 1040 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 STK40Q8N2I9 435 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 PGBD5Q8N414 524 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 RYBPQ8N488 228 aaPredicted RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 CAMKK1Q8N5S9 505 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 DTWD2Q8NBA8 298 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 TSTD1Q8NFU3 115 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 OR8D1Q8WZ84 308 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 ERLEC1Q96DZ1 483 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 ZNF419Q96HQ0 510 aaPredicted RBP17.37■□□□□ 0.37
LIG1-204ENST00000542460 EXOC2Q96KP1 924 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 FAM129BQ96TA1 746 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 MGME1Q9BQP7 344 aa17.37■□□□□ 0.37
LIG1-204ENST00000542460 HEPHQ9BQS7 1158 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms