RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 IER2Q9BTL4 223 aa13.22□□□□□ -0.29
CCDC42-202ENST00000539522 SLC25A13Q9UJS0 675 aa13.22□□□□□ -0.29
CCDC42-202ENST00000539522 FRYLO94915 3013 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 TCRBV21S2A2A0A5A6 115 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 APOC4-APOC2K7ER74 178 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 GALR2O43603 387 aaPredicted RBP13.21□□□□□ -0.29
CCDC42-202ENST00000539522 ATG13O75143 517 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 APOC2P02655 101 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 CR2P20023 1033 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 CETN2P41208 172 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 CLCN6P51797 869 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 RPS14P62263 151 aaKnown RBP13.21□□□□□ -0.29
CCDC42-202ENST00000539522 OTUD4Q01804 1114 aaKnown RBP13.21□□□□□ -0.29
CCDC42-202ENST00000539522 SLC20A2Q08357 652 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 WASHC5Q12768 1159 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 TCF15Q12870 199 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 TFDP2Q14188 446 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 RETSATQ6NUM9 610 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 DPY19L3Q6ZPD9 716 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 ZNF572Q7Z3I7 529 aaPredicted RBP13.21□□□□□ -0.29
CCDC42-202ENST00000539522 TRMT11Q7Z4G4 463 aaKnown RBP13.21□□□□□ -0.29
CCDC42-202ENST00000539522 ATPAF2Q8N5M1 289 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 OR6K2Q8NGY2 324 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 FATE1Q969F0 183 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 ISG20Q96AZ6 181 aaKnown RBP13.21□□□□□ -0.29
CCDC42-202ENST00000539522 EXOC2Q96KP1 924 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 TM6SF2Q9BZW4 377 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 CEP44Q9C0F1 390 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 RSPH9Q9H1X1 276 aaPredicted RBP13.21□□□□□ -0.29
CCDC42-202ENST00000539522 PRDM16Q9HAZ2 1276 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 UBA2Q9UBT2 640 aaPredicted RBP13.21□□□□□ -0.29
CCDC42-202ENST00000539522 SERGEFQ9UGK8 458 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 WASF2Q9Y6W5 498 aa13.21□□□□□ -0.29
CCDC42-202ENST00000539522 EDDM13A0A1B0GTR0 161 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 TARSL2A2RTX5 802 aaKnown RBP13.2□□□□□ -0.3
CCDC42-202ENST00000539522 ZSCAN5CA6NGD5 496 aaPredicted RBP13.2□□□□□ -0.3
CCDC42-202ENST00000539522 EFCAB8A8MWE9 144 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 C10orf142B7Z368 130 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 KCNK1O00180 336 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 MATN3O15232 486 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 ZFXP17010 805 aaPredicted RBP13.2□□□□□ -0.3
CCDC42-202ENST00000539522 CCNCP24863 283 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 HOXA6P31267 233 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 NR2C2P49116 596 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 CCR3P51677 355 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 DGKEP52429 567 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 LBRQ14739 615 aaKnown RBP13.2□□□□□ -0.3
CCDC42-202ENST00000539522 ANGPT1Q15389 498 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 ADAT2Q7Z6V5 191 aaKnown RBP13.2□□□□□ -0.3
CCDC42-202ENST00000539522 ZC3H18Q86VM9 953 aaKnown RBP13.2□□□□□ -0.3
CCDC42-202ENST00000539522 OR2T3Q8NH03 318 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 SLC35B2Q8TB61 432 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.2□□□□□ -0.3
CCDC42-202ENST00000539522 ATG4AQ8WYN0 398 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 ZNF599Q96NL3 588 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 QKIQ96PU8 341 aaKnown RBP eCLIP13.2□□□□□ -0.3
CCDC42-202ENST00000539522 IL12RB2Q99665 862 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 GORASP1Q9BQQ3 440 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 MAK16Q9BXY0 300 aaKnown RBP13.2□□□□□ -0.3
CCDC42-202ENST00000539522 CEP41Q9BYV8 373 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 SP110Q9HB58 689 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 USP29Q9HBJ7 922 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 DONSONQ9NYP3 566 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 PPM1HQ9ULR3 514 aa13.2□□□□□ -0.3
CCDC42-202ENST00000539522 TNRC6BQ9UPQ9 1833 aaKnown RBP13.2□□□□□ -0.3
CCDC42-202ENST00000539522 PGRMC1O00264 195 aaKnown RBP13.19□□□□□ -0.3
CCDC42-202ENST00000539522 PDE2AO00408 941 aaPredicted RBP13.19□□□□□ -0.3
CCDC42-202ENST00000539522 PLK4O00444 970 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 MCF2LO15068 1137 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 HLA-DQB2P05538 268 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 MMP2P08253 660 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 SP9P0CG40 484 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 DRD3P35462 400 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 FNTBP49356 437 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 CCNHP51946 323 aaPredicted RBP13.19□□□□□ -0.3
CCDC42-202ENST00000539522 MAXP61244 160 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 ST8SIA6P61647 398 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 IFI35P80217 286 aaPredicted RBP13.19□□□□□ -0.3
CCDC42-202ENST00000539522 CSTF1Q05048 431 aaKnown RBP13.19□□□□□ -0.3
CCDC42-202ENST00000539522 NIPAL4Q0D2K0 466 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 ACCSLQ4AC99 568 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 CARD16Q5EG05 197 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 SEL1L2Q5TEA6 688 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 TMCO4Q5TGY1 634 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 ALG1LQ6GMV1 187 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 ANO7Q6IWH7 933 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 ZSWIM9Q86XI8 627 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 ZNF354CQ86Y25 554 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 CACUL1Q86Y37 369 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 PLPP6Q8IY26 295 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 CCDC13Q8IYE1 715 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 AADATQ8N5Z0 425 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 PCDH20Q8N6Y1 951 aaKnown RBP13.19□□□□□ -0.3
CCDC42-202ENST00000539522 OR2AP1Q8NGE2 309 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 CCDC26Q8TAB7 109 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 ARRDC2Q8TBH0 407 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 FAM131CQ96AQ9 280 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 PSKH2Q96QS6 385 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 MGME1Q9BQP7 344 aa13.19□□□□□ -0.3
CCDC42-202ENST00000539522 TPSD1Q9BZJ3 242 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms