RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 HMCESQ96FZ2 354 aa15.07■□□□□ 0
USP28-204ENST00000537642 KCTD15Q96SI1 283 aaPredicted RBP15.07■□□□□ 0
USP28-204ENST00000537642 HEPHQ9BQS7 1158 aa15.07■□□□□ 0
USP28-204ENST00000537642 TM6SF2Q9BZW4 377 aa15.07■□□□□ 0
USP28-204ENST00000537642 THAP2Q9H0W7 228 aa15.07■□□□□ 0
USP28-204ENST00000537642 TPX2Q9ULW0 747 aaKnown RBP15.07■□□□□ 0
USP28-204ENST00000537642 NENFQ9UMX5 172 aa15.07■□□□□ 0
USP28-204ENST00000537642 FNDC3AQ9Y2H6 1198 aaKnown RBP15.07■□□□□ 0
USP28-204ENST00000537642 EIF3CLB5ME19 914 aaKnown RBP15.06■□□□□ 0
USP28-204ENST00000537642 RASA4BC9J798 803 aa15.06■□□□□ 0
USP28-204ENST00000537642 EEF2KO00418 725 aaKnown RBP15.06■□□□□ 0
USP28-204ENST00000537642 RASA4O43374 803 aa15.06■□□□□ 0
USP28-204ENST00000537642 CBFA2T2O43439 604 aa15.06■□□□□ 0
USP28-204ENST00000537642 BUB1O43683 1085 aa15.06■□□□□ 0
USP28-204ENST00000537642 PRPSAP2O60256 369 aa15.06■□□□□ 0
USP28-204ENST00000537642 WNT1P04628 370 aa15.06■□□□□ 0
USP28-204ENST00000537642 YBEYP58557 167 aaPredicted RBP15.06■□□□□ 0
USP28-204ENST00000537642 SERINC3Q13530 473 aa15.06■□□□□ 0
USP28-204ENST00000537642 PARP15Q460N3 678 aa15.06■□□□□ 0
USP28-204ENST00000537642 SPECC1LQ69YQ0 1117 aa15.06■□□□□ 0
USP28-204ENST00000537642 ALKBH5Q6P6C2 394 aaKnown RBP15.06■□□□□ 0
USP28-204ENST00000537642 ADAT2Q7Z6V5 191 aaKnown RBP15.06■□□□□ 0
USP28-204ENST00000537642 TRIM69Q86WT6 500 aa15.06■□□□□ 0
USP28-204ENST00000537642 ZNF354CQ86Y25 554 aa15.06■□□□□ 0
USP28-204ENST00000537642 PLPP6Q8IY26 295 aa15.06■□□□□ 0
USP28-204ENST00000537642 VOPP1Q96AW1 172 aa15.06■□□□□ 0
USP28-204ENST00000537642 ARHGEF26Q96DR7 871 aa15.06■□□□□ 0
USP28-204ENST00000537642 EIF3CQ99613 913 aaKnown RBP15.06■□□□□ 0
USP28-204ENST00000537642 HDAC8Q9BY41 377 aa15.06■□□□□ 0
USP28-204ENST00000537642 SLC32A1Q9H598 525 aa15.06■□□□□ 0
USP28-204ENST00000537642 DYRK4Q9NR20 520 aa15.06■□□□□ 0
USP28-204ENST00000537642 HECAQ9UBI9 543 aaPredicted RBP15.06■□□□□ 0
USP28-204ENST00000537642 TRPM6Q9BX84 2022 aa15.05■□□□□ 0
USP28-204ENST00000537642 A0A1W2PR77 199 aa15.05■□□□□ -0
USP28-204ENST00000537642 ZSCAN5CA6NGD5 496 aaPredicted RBP15.05■□□□□ -0
USP28-204ENST00000537642 KCNK3O14649 394 aa15.05■□□□□ -0
USP28-204ENST00000537642 VILLO15195 856 aa15.05■□□□□ -0
USP28-204ENST00000537642 SH3BP5O60239 455 aa15.05■□□□□ -0
USP28-204ENST00000537642 TMCC1O94876 653 aa15.05■□□□□ -0
USP28-204ENST00000537642 GSRP00390 522 aa15.05■□□□□ -0
USP28-204ENST00000537642 CYP1A2P05177 515 aa15.05■□□□□ -0
USP28-204ENST00000537642 ZNF883P0CG24 379 aa15.05■□□□□ -0
USP28-204ENST00000537642 TCF4P15884 667 aa15.05■□□□□ -0
USP28-204ENST00000537642 IL1R2P27930 398 aa15.05■□□□□ -0
USP28-204ENST00000537642 PMLP29590 882 aa15.05■□□□□ -0
USP28-204ENST00000537642 MAT2AP31153 395 aaKnown RBP15.05■□□□□ -0
USP28-204ENST00000537642 GKP32189 559 aa15.05■□□□□ -0
USP28-204ENST00000537642 PCK1P35558 622 aa15.05■□□□□ -0
USP28-204ENST00000537642 EIF4A3P38919 411 aaKnown RBP15.05■□□□□ -0
USP28-204ENST00000537642 CTSKP43235 329 aa15.05■□□□□ -0
USP28-204ENST00000537642 ACAP1Q15027 740 aa15.05■□□□□ -0
USP28-204ENST00000537642 CCDC122Q5T0U0 273 aa15.05■□□□□ -0
USP28-204ENST00000537642 ERN2Q76MJ5 926 aaKnown RBP15.05■□□□□ -0
USP28-204ENST00000537642 PRPF39Q86UA1 669 aaKnown RBP15.05■□□□□ -0
USP28-204ENST00000537642 PSTKQ8IV42 348 aaKnown RBP15.05■□□□□ -0
USP28-204ENST00000537642 VSTM4Q8IW00 320 aa15.05■□□□□ -0
USP28-204ENST00000537642 NETO2Q8NC67 525 aa15.05■□□□□ -0
USP28-204ENST00000537642 OR2AP1Q8NGE2 309 aa15.05■□□□□ -0
USP28-204ENST00000537642 OR6K2Q8NGY2 324 aa15.05■□□□□ -0
USP28-204ENST00000537642 SERAC1Q96JX3 654 aa15.05■□□□□ -0
USP28-204ENST00000537642 BTBD6Q96KE9 485 aa15.05■□□□□ -0
USP28-204ENST00000537642 CAMK1GQ96NX5 476 aa15.05■□□□□ -0
USP28-204ENST00000537642 NCAPGQ9BPX3 1015 aa15.05■□□□□ -0
USP28-204ENST00000537642 ZDHHC6Q9H6R6 413 aa15.05■□□□□ -0
USP28-204ENST00000537642 LRRC19Q9H756 370 aa15.05■□□□□ -0
USP28-204ENST00000537642 PREBQ9HCU5 417 aa15.05■□□□□ -0
USP28-204ENST00000537642 AASDHPPTQ9NRN7 309 aa15.05■□□□□ -0
USP28-204ENST00000537642 TM7SF3Q9NS93 570 aa15.05■□□□□ -0
USP28-204ENST00000537642 RNGTTO60942 597 aaKnown RBP15.04■□□□□ -0
USP28-204ENST00000537642 ITGB7P26010 798 aa15.04■□□□□ -0
USP28-204ENST00000537642 CD38P28907 300 aa15.04■□□□□ -0
USP28-204ENST00000537642 NDST2P52849 883 aa15.04■□□□□ -0
USP28-204ENST00000537642 C21orf59P57076 290 aa15.04■□□□□ -0
USP28-204ENST00000537642 SNRPD1P62314 119 aaKnown RBP15.04■□□□□ -0
USP28-204ENST00000537642 FAM193AP78312 1265 aa15.04■□□□□ -0
USP28-204ENST00000537642 CCDC15Q0P6D6 951 aa15.04■□□□□ -0
USP28-204ENST00000537642 TRIM14Q14142 442 aa15.04■□□□□ -0
USP28-204ENST00000537642 ZNF423Q2M1K9 1284 aa15.04■□□□□ -0
USP28-204ENST00000537642 PPP6R3Q5H9R7 873 aaPredicted RBP15.04■□□□□ -0
USP28-204ENST00000537642 ATXN7L2Q5T6C5 722 aaPredicted RBP15.04■□□□□ -0
USP28-204ENST00000537642 NAPEPLDQ6IQ20 393 aa15.04■□□□□ -0
USP28-204ENST00000537642 RFX8Q6ZV50 586 aa15.04■□□□□ -0
USP28-204ENST00000537642 NAXDQ8IW45 347 aa15.04■□□□□ -0
USP28-204ENST00000537642 RYBPQ8N488 228 aaPredicted RBP15.04■□□□□ -0
USP28-204ENST00000537642 OR8K1Q8NGG5 319 aa15.04■□□□□ -0
USP28-204ENST00000537642 PPP1R16AQ96I34 528 aa15.04■□□□□ -0
USP28-204ENST00000537642 CELF6Q96J87 481 aaKnown RBP15.04■□□□□ -0
USP28-204ENST00000537642 DNAJC7Q99615 494 aa15.04■□□□□ -0
USP28-204ENST00000537642 NUP85Q9BW27 656 aa15.04■□□□□ -0
USP28-204ENST00000537642 SLC39A8Q9C0K1 460 aa15.04■□□□□ -0
USP28-204ENST00000537642 ANAPC7Q9UJX3 599 aa15.04■□□□□ -0
USP28-204ENST00000537642 TPRP12270 2363 aaKnown RBP15.03■□□□□ -0
USP28-204ENST00000537642 SPAARA0A1B0GVQ0 90 aa15.03■□□□□ -0
USP28-204ENST00000537642 A0A1W2PQU0 124 aa15.03■□□□□ -0
USP28-204ENST00000537642 H0Y8X5 98 aa15.03■□□□□ -0
USP28-204ENST00000537642 ADRB3P13945 408 aa15.03■□□□□ -0
USP28-204ENST00000537642 ERCC2P18074 760 aa15.03■□□□□ -0
USP28-204ENST00000537642 NUDT1P36639 197 aa15.03■□□□□ -0
USP28-204ENST00000537642 NEK3P51956 506 aa15.03■□□□□ -0
USP28-204ENST00000537642 DPYSQ14117 519 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms