RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 AMPD1P23109 780 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 MMP13P45452 471 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 FNTBP49356 437 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 SLC10A2Q12908 348 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-208ENST00000537004 XRCC4Q13426 336 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 FNBP1LQ5T0N5 605 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 NCBP2-AS2Q69YL0 99 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 TADA2BQ86TJ2 420 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 DENND1CQ8IV53 801 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 CDKL3Q8IVW4 592 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-208ENST00000537004 ETFBKMTQ8IXQ9 262 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 CCDC13Q8IYE1 715 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 ARHGAP18Q8N392 663 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 ZNF276Q8N554 614 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 KIAA1958Q8N8K9 716 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 ADAM32Q8TC27 787 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 RNF139Q8WU17 664 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 NELL1Q92832 810 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 OTUB2Q96DC9 234 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 ARHGEF4Q9NR80 690 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 ZSCAN32Q9NX65 697 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 PAK5Q9P286 719 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 CTNNAL1Q9UBT7 734 aa12.2□□□□□ -0.46
CLIP1-208ENST00000537004 XPO7Q9UIA9 1087 aaKnown RBP12.2□□□□□ -0.46
CLIP1-208ENST00000537004 AGO1Q9UL18 857 aaKnown RBP12.2□□□□□ -0.46
CLIP1-208ENST00000537004 KAT7O95251 611 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 TYRP14679 529 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 COG7P83436 770 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 LPAL2Q16609 132 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 MSS51Q4VC12 460 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 CCDC38Q502W7 563 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 SLC45A4Q5BKX6 768 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 EFHC2Q5JST6 749 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 ZC3H14Q6PJT7 736 aaKnown RBP12.19□□□□□ -0.46
CLIP1-208ENST00000537004 CCDC33Q8N5R6 958 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 BCAS4Q8TDM0 211 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 LRRN4Q8WUT4 740 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 IRGQQ8WZA9 623 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 HHIPQ96QV1 700 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 SELENOSQ9BQE4 189 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 IER2Q9BTL4 223 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 BBS2Q9BXC9 721 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 ETNK2Q9NVF9 386 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 PCDHGA2Q9Y5H1 932 aa12.19□□□□□ -0.46
CLIP1-208ENST00000537004 E7ESA3 106 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 H3BRJ5 948 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 HOXC11O43248 304 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-208ENST00000537004 CDH16O75309 829 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 ATP5DP30049 168 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 KCNJ11Q14654 390 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 FAM182AQ5T1J6 154 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 TAOK1Q7L7X3 1001 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 ANKMY2Q8IV38 441 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 PDIK1LQ8N165 341 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 PHTF2Q8N3S3 785 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 MDM1Q8TC05 714 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 PGAP3Q96FM1 320 aaPredicted RBP12.18□□□□□ -0.46
CLIP1-208ENST00000537004 QKIQ96PU8 341 aaKnown RBP eCLIP12.18□□□□□ -0.46
CLIP1-208ENST00000537004 CDK5RAP1Q96SZ6 601 aaKnown RBP12.18□□□□□ -0.46
CLIP1-208ENST00000537004 EPN3Q9H201 632 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 RABEP2Q9H5N1 569 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 VPS37BQ9H9H4 285 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 PRDM16Q9HAZ2 1276 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 ABCC13Q9NSE7 274 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 RRN3Q9NYV6 651 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 DTLQ9NZJ0 730 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 LGALS13Q9UHV8 139 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 MFHAS1Q9Y4C4 1052 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 DOCK4Q8N1I0 1966 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 EXOC1LA0A1B0GW35 172 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 TBC1D3BA6NDS4 549 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 E7EVH7 732 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 CREB3O43889 395 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 LMNAP02545 664 aaKnown RBP12.18□□□□□ -0.46
CLIP1-208ENST00000537004 ADRA1BP35368 520 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 TIE1P35590 1138 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 AIF1P55008 147 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 SCAPQ12770 1279 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 FBXO43Q4G163 708 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 FOXR1Q6PIV2 292 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 CAPN12Q6ZSI9 719 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 EXOC3L1Q86VI1 746 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 SCML4Q8N228 414 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 DCLK2Q8N568 766 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 SUMF1Q8NBK3 374 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 USP33Q8TEY7 942 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 PYROXD1Q8WU10 500 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 ARHGEF2Q92974 986 aaKnown RBP12.18□□□□□ -0.46
CLIP1-208ENST00000537004 NTAN1Q96AB6 310 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 ERLEC1Q96DZ1 483 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 OLFM3Q96PB7 478 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 RAB6BQ9NRW1 208 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 DDIT4Q9NX09 232 aa12.18□□□□□ -0.46
CLIP1-208ENST00000537004 SRRM3A6NNA2 597 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-208ENST00000537004 HRO43593 1189 aa12.17□□□□□ -0.46
CLIP1-208ENST00000537004 CHRM1P11229 460 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-208ENST00000537004 MTM1Q13496 603 aa12.17□□□□□ -0.46
CLIP1-208ENST00000537004 DMC1Q14565 340 aa12.17□□□□□ -0.46
CLIP1-208ENST00000537004 PPP2R5DQ14738 602 aa12.17□□□□□ -0.46
CLIP1-208ENST00000537004 BBS9Q3SYG4 887 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms