RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 CDKAL1Q5VV42 579 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 ZNF354CQ86Y25 554 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 TMEM145Q8NBT3 493 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 ANKRD20A12PQ8NF67 263 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 OR13H1Q8NG92 308 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 JOSD2Q8TAC2 188 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 SELENOOQ9BVL4 669 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 TM6SF2Q9BZW4 377 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 HECAQ9UBI9 543 aaPredicted RBP18.16■□□□□ 0.5
PCF11-206ENST00000533018 DKK4Q9UBT3 224 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 ZNF212Q9UDV6 495 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 HPCAL4Q9UM19 191 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 ZFR2Q9UPR6 939 aaKnown RBP18.16■□□□□ 0.5
PCF11-206ENST00000533018 AK5Q9Y6K8 562 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 WASF2Q9Y6W5 498 aa18.16■□□□□ 0.5
PCF11-206ENST00000533018 EPHB6O15197 1021 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 FFAR2O15552 330 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 SIGLEC6O43699 453 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 ZNF821O75541 412 aaPredicted RBP18.15■□□□□ 0.5
PCF11-206ENST00000533018 ZMPSTE24O75844 475 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 KRT3P12035 628 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 ADRB3P13945 408 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 HOXB3P14651 431 aaPredicted RBP18.15■□□□□ 0.5
PCF11-206ENST00000533018 ANP32AP39687 249 aaKnown RBP18.15■□□□□ 0.5
PCF11-206ENST00000533018 JAM2P57087 298 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 RPS21P63220 83 aaKnown RBP18.15■□□□□ 0.5
PCF11-206ENST00000533018 TARDBPQ13148 414 aaKnown RBP eCLIP18.15■□□□□ 0.58e-6■□□□□ 10.7
PCF11-206ENST00000533018 SASS6Q6UVJ0 657 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 TRIM72Q6ZMU5 477 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 NEK11Q8NG66 645 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 OR6K2Q8NGY2 324 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 FAM172AQ8WUF8 416 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 TSC1Q92574 1164 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 FEM1CQ96JP0 617 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 DCBLD2Q96PD2 775 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 SLC17A9Q9BYT1 436 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 NDFIP2Q9NV92 336 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 ADAM22Q9P0K1 906 aa18.15■□□□□ 0.5
PCF11-206ENST00000533018 LOC400499M0QZD8 3231 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 C2CD4BA6NLJ0 364 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 NEMP1O14524 444 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 PAK4O96013 591 aaPredicted RBP18.14■□□□□ 0.49
PCF11-206ENST00000533018 PLEKP08567 350 aaPredicted RBP18.14■□□□□ 0.49
PCF11-206ENST00000533018 RHOQP17081 205 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 CDK11BP21127 795 aaKnown RBP18.14■□□□□ 0.49
PCF11-206ENST00000533018 DGKAP23743 735 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 ITGB7P26010 798 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 L1CAMP32004 1257 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 MAPKAPK2P49137 400 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 ILKQ13418 452 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 POLD3Q15054 466 aaPredicted RBP18.14■□□□□ 0.49
PCF11-206ENST00000533018 ARTNQ5T4W7 220 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 LEKR1Q6ZMV7 388 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 Q6ZSR6 202 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 STRADAQ7RTN6 431 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 KANSL1Q7Z3B3 1105 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 PTAR1Q7Z6K3 402 aaPredicted RBP18.14■□□□□ 0.49
PCF11-206ENST00000533018 SLC25A45Q8N413 288 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 NXPE2Q96DL1 559 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 TBC1D31Q96DN5 1066 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 LRIG1Q96JA1 1093 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 MAGEB5Q9BZ81 275 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 OSBPL2Q9H1P3 480 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 KLHL11Q9NVR0 708 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 UCKL1Q9NWZ5 548 aa18.14■□□□□ 0.49
PCF11-206ENST00000533018 A6NNZ2 444 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 FAM72CH0Y354 149 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 KRIT1O00522 736 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 TRIM38O00635 465 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 LRIG2O94898 1065 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 UNGP13051 313 aaPredicted RBP18.13■□□□□ 0.49
PCF11-206ENST00000533018 GPD1P21695 349 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 GKP32189 559 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 PTPN9P43378 593 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 COPB1P53618 953 aaKnown RBP18.13■□□□□ 0.49
PCF11-206ENST00000533018 GEMIN4P57678 1058 aaKnown RBP18.13■□□□□ 0.49
PCF11-206ENST00000533018 NRG1Q02297 640 aaPredicted RBP18.13■□□□□ 0.49
PCF11-206ENST00000533018 SEMG2Q02383 582 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 UBXN1Q04323 297 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 SGCGQ13326 291 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 ZNF211Q13398 564 aaPredicted RBP18.13■□□□□ 0.49
PCF11-206ENST00000533018 ZNF542PQ5EBM4 170 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 FAM72AQ5TYM5 149 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 FAM72DQ6L9T8 149 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 KIAA1161Q6NSJ0 714 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 SCYL2Q6P3W7 929 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 GCNT7Q6ZNI0 430 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 PARS2Q7L3T8 475 aaKnown RBP18.13■□□□□ 0.49
PCF11-206ENST00000533018 TMC6Q7Z403 805 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 PDZD3Q86UT5 571 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 FAM72BQ86X60 149 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 CCDC185Q8N715 623 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 ARHGEF2Q92974 986 aaKnown RBP18.13■□□□□ 0.49
PCF11-206ENST00000533018 PCDHB18PQ96TA0 734 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 MAGEH1Q9H213 219 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 TMEM248Q9NWD8 314 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 DNAJC28Q9NX36 388 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 IPO11Q9UI26 975 aaKnown RBP18.13■□□□□ 0.49
PCF11-206ENST00000533018 SIK3Q9Y2K2 1263 aa18.13■□□□□ 0.49
PCF11-206ENST00000533018 DAAM1Q9Y4D1 1078 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms