RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 VANGL2Q9ULK5 521 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 SORCS3Q9UPU3 1222 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 CCL26Q9Y258 94 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 TBC1D30Q9Y2I9 924 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 AK5Q9Y6K8 562 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 MYOFQ9NZM1 2061 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 DENND4AQ7Z401 1863 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 WDFY4Q6ZS81 3184 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 CXorf51AA0A1B0GTR3 108 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 TYW5A2RUC4 315 aaKnown RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 HEPACAM2A8MVW5 462 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 ANHXE9PGG2 379 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 APOC4-APOC2K7ER74 178 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 KRIT1O00522 736 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 DCLK1O15075 740 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 CHADO15335 359 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 PRAMEF12O95522 483 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 APOC2P02655 101 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 CYBBP04839 570 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 PSMC3P17980 439 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 SLC6A4P31645 630 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 STIP1P31948 543 aaKnown RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 SERPINB6P35237 376 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 VIPR2P41587 438 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 DNA2P51530 1060 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 RAC1P63000 192 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 LMNB2Q03252 620 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 ADCY2Q08462 1091 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 ZNF177Q13360 481 aaPredicted RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 SLC12A1Q13621 1099 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 PDGFRLQ15198 375 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 CYP1B1Q16678 543 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 ZNF423Q2M1K9 1284 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 KAZNQ674X7 775 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 RNF43Q68DV7 783 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 RWDD4Q6NW29 188 aaKnown RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 AADACL2Q6P093 401 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 RHBDF2Q6PJF5 856 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 TMCO3Q6UWJ1 677 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 ZNF783Q6ZMS7 281 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 GET4Q7L5D6 327 aaPredicted RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 ANKS1BQ7Z6G8 1248 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 SETD3Q86TU7 594 aaPredicted RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 NLRP14Q86W24 1093 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 CHSY1Q86X52 802 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 RFX6Q8HWS3 928 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 BBS7Q8IWZ6 715 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 SUGP1Q8IWZ8 645 aaKnown RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 LGI2Q8N0V4 545 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 UMODL1-AS1Q8N2C9 162 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 RTL3Q8N8U3 475 aaKnown RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 GALNT11Q8NCW6 608 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 SPATA4Q8NEY3 305 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 ATL2Q8NHH9 583 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 FIBINQ8TAL6 211 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 DEPDC1BQ8WUY9 529 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 IGSF8Q969P0 613 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 RPRD1AQ96P16 312 aaPredicted RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 TSGA13Q96PP4 275 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 FAM83CQ9BQN1 747 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 TRMT61BQ9BVS5 477 aaKnown RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 SLC2A11Q9BYW1 496 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 CLEC4MQ9H2X3 399 aaPredicted RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 SRA1Q9HD15 236 aaKnown RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 ARHGEF4Q9NR80 690 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 SPHK2Q9NRA0 654 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 DUS2Q9NX74 493 aaKnown RBP7.58□□□□□ -1.2
CD44-228ENST00000528455 IGSF9Q9P2J2 1179 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 TECTAO75443 2155 aa7.58□□□□□ -1.2
CD44-228ENST00000528455 CHD5Q8TDI0 1954 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 GOLGA6L10A0A0M3HER8 536 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 A0A1B0GVM2 712 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 TCRBV7S2A1N4TA0A589 114 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 ILVBLA1L0T0 632 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 CTAGE15A4D2H0 777 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 TCAF2A6NFQ2 919 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 HACD1B0YJ81 288 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 PENKP01210 267 aaPredicted RBP7.57□□□□□ -1.2
CD44-228ENST00000528455 CTAGE8P0CG41 777 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 ESRRAP11474 423 aaPredicted RBP7.57□□□□□ -1.2
CD44-228ENST00000528455 FCARP24071 287 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 CCNCP24863 283 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 OR1E1P30953 314 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 CHRNA3P32297 505 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 PLA2G5P39877 138 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 MAPKAPK2P49137 400 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 PLK1P53350 603 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 GAD2Q05329 585 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 PCDH1Q08174 1060 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 SLC20A2Q08357 652 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 SLC10A2Q12908 348 aaPredicted RBP7.57□□□□□ -1.2
CD44-228ENST00000528455 PDK1Q15118 436 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 SIX1Q15475 284 aaPredicted RBP7.57□□□□□ -1.2
CD44-228ENST00000528455 PARP15Q460N3 678 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 ALFQ53S48 1182 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 PRRT3Q5FWE3 981 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 FYB2Q5VWT5 728 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 AFMIDQ63HM1 303 aa7.57□□□□□ -1.2
CD44-228ENST00000528455 NCBP2-AS2Q69YL0 99 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms