RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 HIPK3Q9H422 1215 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 DPEP3Q9H4B8 488 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 L2HGDHQ9H9P8 463 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 CD248Q9HCU0 757 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 RGS18Q9NS28 235 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 FAM49BQ9NUQ9 324 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 ADAM22Q9P0K1 906 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 FBLN5Q9UBX5 448 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 CNOT8Q9UFF9 292 aaKnown RBP4.34□□□□□ -1.71
CD44-226ENST00000527889 CYTH4Q9UIA0 394 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 CDC23Q9UJX2 597 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 MAFFQ9ULX9 164 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 RWDD3Q9Y3V2 267 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 SQORQ9Y6N5 450 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 COL4A4P53420 1690 aaPredicted RBP4.34□□□□□ -1.71
CD44-226ENST00000527889 LRRK1Q38SD2 2015 aa4.34□□□□□ -1.71
CD44-226ENST00000527889 GOLGA4Q13439 2230 aaKnown RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 FADS2P1A8MWK0 482 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 A8MXQ7 604 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 RASA4BC9J798 803 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 GOLGA8SH3BPF8 625 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TULP2O00295 520 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 O00370 1275 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 CLDN5O00501 218 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 RASA4O43374 803 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 MED7O43513 233 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 HYAL3O43820 417 aaPredicted RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 HUS1O60921 280 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 ATP2C2O75185 946 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TADA3O75528 432 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 DDHD2O94830 711 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 ALDH2P05091 517 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 ITGB1P05556 798 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 CEACAM5P06731 702 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 PFKMP08237 780 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 CCDC130P13994 396 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 PTPN1P18031 435 aaKnown RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 WARSP23381 471 aaKnown RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 ADORA2BP29275 332 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 SSTR4P31391 388 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 CDH5P33151 784 aaPredicted RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 GJA4P35212 333 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 GNL1P36915 607 aaPredicted RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 PNPLA4P41247 253 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 CD97P48960 835 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 MARCKSL1P49006 195 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 RGS7P49802 495 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 RABGGTBP53611 331 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 BCAR1P56945 870 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 GEMIN4P57678 1058 aaKnown RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 RNASE9P60153 205 aaKnown RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 C2orf54Q08AI8 447 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 PTP4A2Q12974 167 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 GRIK3Q13003 919 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 DUSP4Q13115 394 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TUSC3Q13454 348 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 LRP8Q14114 963 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 PDE1CQ14123 709 aaPredicted RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 MESDQ14696 234 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 RPS6KA1Q15418 735 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 UPP1Q16831 310 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 LRRC26Q2I0M4 334 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 PGS1Q32NB8 556 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TUBB8Q3ZCM7 444 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 PTPN20Q4JDL3 420 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TIGD5Q53EQ6 642 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 EMC4Q5J8M3 183 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TEX35Q5T0J7 233 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 ARTNQ5T4W7 220 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 LIN9Q5TKA1 542 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 MBNL2Q5VZF2 373 aaKnown RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 WSCD1Q658N2 575 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 DARS2Q6PI48 645 aaKnown RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 GLB1LQ6UWU2 654 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 CD300LGQ6UXG3 332 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 NPNTQ6UXI9 565 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 DSTYKQ6XUX3 929 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 SLC24A5Q71RS6 500 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 ANKRD33Q7Z3H0 272 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 LIMS2Q7Z4I7 341 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 SLFN11Q7Z7L1 901 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 NT5DC3Q86UY8 548 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 ERICH1Q86X53 443 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 ZNF280BQ86YH2 543 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 PHF13Q86YI8 300 aaPredicted RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 PHYKPLQ8IUZ5 450 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 LYSMD2Q8IV50 215 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 RHOT2Q8IXI1 618 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 RBM12BQ8IXT5 1001 aaKnown RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 ADGRF2Q8IZF7 708 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 KRT78Q8N1N4 520 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 PDCL2Q8N4E4 241 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 WDTC1Q8N5D0 677 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 ARL6IP6Q8N6S5 226 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 TMEM35BQ8NCS4 154 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 APPL2Q8NEU8 664 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 PPHLN1Q8NEY8 458 aaKnown RBP4.33□□□□□ -1.72
CD44-226ENST00000527889 TSPEARQ8WU66 669 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 AUTS2Q8WXX7 1259 aa4.33□□□□□ -1.72
CD44-226ENST00000527889 CENPTQ96BT3 561 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms