RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	HMGB1P1	B2RPK0	211 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-223	ENST00000526553		I6L893	689 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-223	ENST00000526553	IKBKB	O14920	756 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	ANP32C	O43423	234 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	CLDN7	O95471	211 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	TKT	P29401	623 aa	Known RBP	4.99	□□□□□ -1.61
CD44-223	ENST00000526553	HOXD3	P31249	432 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-223	ENST00000526553	RFC1	P35251	1148 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-223	ENST00000526553	MLH1	P40692	756 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	GPR12	P47775	334 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	CDH12	P55289	794 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	GPS2	Q13227	327 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	ERV3-1	Q14264	604 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	SMAP1	Q8IYB5	467 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-223	ENST00000526553	PRR26	Q8N8Z3	221 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	MYRIP	Q8NFW9	859 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	THOC3	Q96J01	351 aa	Known RBP	4.99	□□□□□ -1.61
CD44-223	ENST00000526553	NTPCR	Q9BSD7	190 aa	Known RBP	4.99	□□□□□ -1.61
CD44-223	ENST00000526553	KRTAP9-8	Q9BYQ0	159 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	HIPK2	Q9H2X6	1198 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	CXorf56	Q9H5V9	222 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	ATP8A2	Q9NTI2	1148 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553	MYO6	Q9UM54	1294 aa		4.99	□□□□□ -1.61
CD44-223	ENST00000526553		A0A096LPK6	155 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	LACTBL1	A8MY62	500 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	INAFM1	C9JVW0	142 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	VWA5A	O00534	786 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	NPHP1	O15259	732 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	SERPINC1	P01008	464 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	HOXC6	P09630	235 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	T-ENOL	P0DO92	83 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	HSD3B1	P14060	373 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	PTPN9	P43378	593 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	RFX5	P48382	616 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-223	ENST00000526553	EGR4	Q05215	589 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553		Q0VFX4	171 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	MAP3K21	Q5TCX8	1036 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553		Q6ZSV7	163 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	BBS12	Q6ZW61	710 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	ANKRD18A	Q8IVF6	992 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	IQCF1	Q8N6M8	205 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	TEX45	Q8NA69	505 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	OR4N2	Q8NGD1	307 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	ZNF479	Q96JC4	524 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	ZSCAN31	Q96LW9	406 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-223	ENST00000526553	STN1	Q9H668	368 aa	Known RBP	4.98	□□□□□ -1.61
CD44-223	ENST00000526553	ENTPD7	Q9NQZ7	604 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	NLK	Q9UBE8	527 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	CNPY2	Q9Y2B0	182 aa		4.98	□□□□□ -1.61
CD44-223	ENST00000526553	SRPRB	Q9Y5M8	271 aa	Known RBP	4.98	□□□□□ -1.61
CD44-223	ENST00000526553	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-223	ENST00000526553	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-223	ENST00000526553	FAM157A	C9JC47	383 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	PEX12	O00623	359 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	KLK10	O43240	276 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	LDB2	O43679	373 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	ADA	P00813	363 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	IL1A	P01583	271 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	NGFR	P08138	427 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	WEE2	P0C1S8	567 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	PAX3	P23760	479 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	PPM1F	P49593	454 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-223	ENST00000526553	POU5F1B	Q06416	359 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	TBL3	Q12788	808 aa	Known RBP	4.97	□□□□□ -1.61
CD44-223	ENST00000526553	SLC4A8	Q2Y0W8	1093 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	FNBP1L	Q5T0N5	605 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	NAPEPLD	Q6IQ20	393 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	MEPCE	Q7L2J0	689 aa	Known RBP	4.97	□□□□□ -1.61
CD44-223	ENST00000526553	ZNF367	Q7RTV3	350 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	RBFA	Q8N0V3	343 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	CPXCR1	Q8N123	301 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	GHDC	Q8N2G8	530 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	ZMIZ2	Q8NF64	920 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	GCC1	Q96CN9	775 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	APOLD1	Q96LR9	279 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	REEP2	Q9BRK0	252 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	SELENON	Q9NZV5	590 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	IL36RN	Q9UBH0	155 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	WNT16	Q9UBV4	365 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	PTGDR2	Q9Y5Y4	395 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553	DGKB	Q9Y6T7	804 aa		4.97	□□□□□ -1.61
CD44-223	ENST00000526553		A0A1B0GVT2	93 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	FAM90A7P	A6NKC0	464 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	FAM90A22P	A8MWA6	464 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	FAM90A12P	A8MX19	464 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	FAM90A23P	A8MXZ1	464 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	EYA2	O00167	538 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	LIAS	O43766	372 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	SH3BP5	O60239	455 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	SOX30	O94993	753 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	CHRM4	P08173	479 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	CCT5	P48643	541 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	ABAT	P80404	500 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	ZXDB	P98169	803 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	SLC12A1	Q13621	1099 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	SLC18A3	Q16572	532 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	ME3	Q16798	604 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	ZNF284	Q2VY69	593 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	FSCB	Q5H9T9	825 aa		4.96	□□□□□ -1.62
CD44-223	ENST00000526553	UBAP2	Q5T6F2	1119 aa	Known RBP	4.96	□□□□□ -1.62

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