RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 POU6F1Q14863 301 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 GPR162Q16538 588 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 DENND5AQ6IQ26 1287 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 ARHGAP36Q6ZRI8 547 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 ACAD11Q709F0 780 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 THEM5Q8N1Q8 247 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 FSTL5Q8N475 847 aaPredicted RBP21.53■■□□□ 1.04
VPS28-205ENST00000526204 RGSL1A5PLK6 1076 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 M0QZQ0 153 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 PAGE1O75459 146 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 SNUPNO95149 360 aaKnown RBP21.53■■□□□ 1.04
VPS28-205ENST00000526204 CELF2O95319 508 aaKnown RBP21.53■■□□□ 1.04
VPS28-205ENST00000526204 MT-CYBP00156 380 aaPredicted RBP21.53■■□□□ 1.04
VPS28-205ENST00000526204 STMN1P16949 149 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 MPSTP25325 297 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 MTTPP55157 894 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 ARL13AQ5H913 290 aaPredicted RBP21.53■■□□□ 1.04
VPS28-205ENST00000526204 GNASQ5JWF2 1037 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 MANEALQ5VSG8 457 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 ARMC3Q5W041 872 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 BTBD8Q5XKL5 378 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 SETD3Q86TU7 594 aaPredicted RBP21.53■■□□□ 1.04
VPS28-205ENST00000526204 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.53■■□□□ 1.04
VPS28-205ENST00000526204 AGR3Q8TD06 166 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 PDCD6IPQ8WUM4 868 aaKnown RBP21.53■■□□□ 1.04
VPS28-205ENST00000526204 KCTD4Q8WVF5 259 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 PYDC1Q8WXC3 89 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 SOCS4Q8WXH5 440 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 LENG8Q96PV6 779 aaPredicted RBP21.53■■□□□ 1.04
VPS28-205ENST00000526204 FICDQ9BVA6 458 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 SMOC2Q9H3U7 446 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 TMLHEQ9NVH6 421 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 TCAF1Q9Y4C2 921 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 ARHGEF37A1IGU5 675 aa21.52■■□□□ 1.04
VPS28-205ENST00000526204 TARM1B6A8C7 271 aa21.52■■□□□ 1.04
VPS28-205ENST00000526204 BUD23O43709 281 aaKnown RBP21.52■■□□□ 1.04
VPS28-205ENST00000526204 PIGNO95427 931 aa21.52■■□□□ 1.04
VPS28-205ENST00000526204 ADRA1AP35348 466 aa21.52■■□□□ 1.04
VPS28-205ENST00000526204 ARCN1P48444 511 aaKnown RBP21.52■■□□□ 1.04
VPS28-205ENST00000526204 NAGLUP54802 743 aa21.52■■□□□ 1.04
VPS28-205ENST00000526204 ITGA7Q13683 1181 aa21.52■■□□□ 1.04
VPS28-205ENST00000526204 GDF6Q6KF10 455 aaPredicted RBP21.52■■□□□ 1.04
VPS28-205ENST00000526204 LRRC8EQ6NSJ5 796 aa21.52■■□□□ 1.04
VPS28-205ENST00000526204 TMC7Q7Z402 723 aa21.52■■□□□ 1.04
VPS28-205ENST00000526204 SERINC5Q86VE9 423 aa21.52■■□□□ 1.04
VPS28-205ENST00000526204 SLC41A1Q8IVJ1 513 aa21.52■■□□□ 1.04
VPS28-205ENST00000526204 CENPLQ8N0S6 344 aaPredicted RBP21.52■■□□□ 1.04
VPS28-205ENST00000526204 CPSF7Q8N684 471 aaKnown RBP21.52■■□□□ 1.04
VPS28-205ENST00000526204 SLC39A8Q9C0K1 460 aa21.52■■□□□ 1.04
VPS28-205ENST00000526204 PRPF19Q9UMS4 504 aaKnown RBP21.52■■□□□ 1.04
VPS28-205ENST00000526204 CCDC78A2IDD5 438 aa21.52■■□□□ 1.03
VPS28-205ENST00000526204 MYADML2A6NDP7 307 aa21.52■■□□□ 1.03
VPS28-205ENST00000526204 KPNA2P52292 529 aaKnown RBP21.52■■□□□ 1.03
VPS28-205ENST00000526204 XIAPP98170 497 aa21.52■■□□□ 1.03
VPS28-205ENST00000526204 TSPY1Q01534 308 aa21.52■■□□□ 1.03
VPS28-205ENST00000526204 CDC16Q13042 620 aa21.52■■□□□ 1.03
VPS28-205ENST00000526204 OVOS1Q6IE37 1185 aa21.52■■□□□ 1.03
VPS28-205ENST00000526204 RP9Q8TA86 221 aaKnown RBP21.52■■□□□ 1.03
VPS28-205ENST00000526204 SCAMP5Q8TAC9 235 aa21.52■■□□□ 1.03
VPS28-205ENST00000526204 CCDC124Q96CT7 223 aaKnown RBP21.52■■□□□ 1.03
VPS28-205ENST00000526204 FCRL2Q96LA5 508 aaPredicted RBP21.52■■□□□ 1.03
VPS28-205ENST00000526204 SERPINI1Q99574 410 aa21.52■■□□□ 1.03
VPS28-205ENST00000526204 CCDC28BQ9BUN5 200 aa21.52■■□□□ 1.03
VPS28-205ENST00000526204 FSD1LQ9BXM9 530 aa21.52■■□□□ 1.03
VPS28-205ENST00000526204 PRKD2Q9BZL6 878 aa21.52■■□□□ 1.03
VPS28-205ENST00000526204 POMCP01189 267 aa21.51■■□□□ 1.03
VPS28-205ENST00000526204 PIK3R1P27986 724 aa21.51■■□□□ 1.03
VPS28-205ENST00000526204 BRCC3P46736 316 aa21.51■■□□□ 1.03
VPS28-205ENST00000526204 MGAT3Q09327 533 aa21.51■■□□□ 1.03
VPS28-205ENST00000526204 HNRNPDQ14103 355 aaKnown RBP21.51■■□□□ 1.03
VPS28-205ENST00000526204 TAF1CQ15572 869 aaPredicted RBP21.51■■□□□ 1.03
VPS28-205ENST00000526204 LSM12Q3MHD2 195 aaKnown RBP21.51■■□□□ 1.03
VPS28-205ENST00000526204 ESRP1Q6NXG1 681 aaKnown RBP21.51■■□□□ 1.03
VPS28-205ENST00000526204 C16orf89Q6UX73 402 aa21.51■■□□□ 1.03
VPS28-205ENST00000526204 LRRTM3Q86VH5 581 aa21.51■■□□□ 1.03
VPS28-205ENST00000526204 HPS6Q86YV9 775 aa21.51■■□□□ 1.03
VPS28-205ENST00000526204 SHKBP1Q8TBC3 707 aa21.51■■□□□ 1.03
VPS28-205ENST00000526204 PPP2R3CQ969Q6 453 aa21.51■■□□□ 1.03
VPS28-205ENST00000526204 UROC1Q96N76 676 aa21.51■■□□□ 1.03
VPS28-205ENST00000526204 WDR55Q9H6Y2 383 aaPredicted RBP21.51■■□□□ 1.03
VPS28-205ENST00000526204 ZDHHC7Q9NXF8 308 aa21.51■■□□□ 1.03
VPS28-205ENST00000526204 FAM95CA0A1B0GW59 222 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 AVPR1AP37288 418 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 GLRBP48167 497 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 TUBP50607 506 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 GRIK3Q13003 919 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 CTBP1Q13363 440 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 PAN2Q504Q3 1202 aaKnown RBP21.5■■□□□ 1.03
VPS28-205ENST00000526204 MAP3K21Q5TCX8 1036 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 OR52E8Q6IFG1 317 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 DENND6AQ8IWF6 608 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 OR10T2Q8NGX3 314 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 RSPH1Q8WYR4 309 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 AGO3Q9H9G7 860 aaKnown RBP21.5■■□□□ 1.03
VPS28-205ENST00000526204 RBM22Q9NW64 420 aaKnown RBP eCLIP21.5■■□□□ 1.03
VPS28-205ENST00000526204 FNIP2Q9P278 1114 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 CDYLQ9Y232 598 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 A0A087X1B8 175 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 GOLGA8QA0A0J9YX86 632 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 GOLGA8OA6NCC3 632 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms