RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TOR4AQ9NXH8 423 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 MPP6Q9NZW5 540 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 SCML1Q9UN30 329 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 BTBD3Q9Y2F9 522 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 ADAMTS20P59510 1910 aa10.37□□□□□ -0.75
VPS28-204ENST00000526054 CHD5Q8TDI0 1954 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 A0A1W2PP55 124 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 FAM72CH0Y354 149 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 TAF4O00268 1085 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 EEF2KO00418 725 aaKnown RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 FGF10O15520 208 aaPredicted RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 ARHGAP6O43182 974 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 CREB3O43889 395 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 CAPNS1P04632 268 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 KRT7P08729 469 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 ATXN1LP0C7T5 689 aaKnown RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 RHOQP17081 205 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 EPHB2P29323 1055 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 OR1E1P30953 314 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 MAPKAPK2P49137 400 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 VAV2P52735 878 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 HADHBP55084 474 aaKnown RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 C21orf59P57076 290 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 TPI1P60174 286 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 IL9RQ01113 521 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 SLC25A11Q02978 314 aaKnown RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 SFSWAPQ12872 951 aaKnown RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 CST6Q15828 149 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 SMTNL2Q2TAL5 461 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 PPP6R3Q5H9R7 873 aaPredicted RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 FSCBQ5H9T9 825 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 PITRM1Q5JRX3 1037 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 FAM72AQ5TYM5 149 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 RNF219Q5W0B1 726 aaPredicted RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 FAM72DQ6L9T8 149 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 CXorf57Q6NSI4 855 aaKnown RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 ZNF783Q6ZMS7 281 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 DBX2Q6ZNG2 339 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 TFAP2DQ7Z6R9 452 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 SETD3Q86TU7 594 aaPredicted RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 FAM72BQ86X60 149 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 PYROXD2Q8N2H3 581 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 TEKT4Q8WW24 435 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 TTC17Q96AE7 1141 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 LMLNQ96KR4 655 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 MRGPRX3Q96LB0 322 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 ACE2Q9BYF1 805 aaPredicted RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 MUC3BQ9H195 1237 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 ZWILCHQ9H900 591 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 GPATCH2LQ9NWQ4 482 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 FBXL12Q9NXK8 326 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 DONSONQ9NYP3 566 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 SERGEFQ9UGK8 458 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 INTS6Q9UL03 887 aaKnown RBP10.36□□□□□ -0.75
VPS28-204ENST00000526054 TBC1D30Q9Y2I9 924 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 LOC400499M0QZD8 3231 aa10.36□□□□□ -0.75
VPS28-204ENST00000526054 COL5A1P20908 1838 aaPredicted RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 EDDM13A0A1B0GTR0 161 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 BTNL10A8MVZ5 291 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 H0Y8X5 98 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 H3BRJ5 948 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 KCNK3O14649 394 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 MID1O15344 667 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 DAPK3O43293 454 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 TNFSF14O43557 240 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 PCDHGA12O60330 932 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 RNASEH2AO75792 299 aaKnown RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 IGHV4-34P06331 123 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 PTMAP06454 111 aaKnown RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 SRPRAP08240 638 aaKnown RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 HOXB3P14651 431 aaPredicted RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 IL1R2P27930 398 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 GJC1P36383 396 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 ETFBP38117 255 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 ARL4AP40617 200 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 SLC1A1P43005 524 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 CTSKP43235 329 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 PSMD8P48556 350 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 PLK1P53350 603 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 NAP1L1P55209 391 aaKnown RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 RACK1P63244 317 aaKnown RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 SULT2A1Q06520 285 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 KRT81Q14533 505 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 DPYSL2Q16555 572 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 CCDC157Q569K6 752 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 KCNT1Q5JUK3 1230 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 ZFYVE27Q5T4F4 411 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 NCEH1Q6PIU2 408 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 CYP4V2Q6ZWL3 525 aaPredicted RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 TMPRSS7Q7RTY8 843 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 MMAAQ8IVH4 418 aaKnown RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 LRRC8AQ8IWT6 810 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 GALNT15Q8N3T1 639 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 RTL3Q8N8U3 475 aaKnown RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 KDM1BQ8NB78 822 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 MDM1Q8TC05 714 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 HSPH1Q92598 858 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 SLC6A18Q96N87 628 aa10.35□□□□□ -0.75
VPS28-204ENST00000526054 KCTD15Q96SI1 283 aaPredicted RBP10.35□□□□□ -0.75
VPS28-204ENST00000526054 OMDQ99983 421 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms