RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 MXD3Q9BW11 206 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 IFT27Q9BW83 186 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 NLKQ9UBE8 527 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 RPS6KA6Q9UK32 745 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 MKLN1Q9UL63 735 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 MAFFQ9ULX9 164 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 ICKQ9UPZ9 632 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 CLDN16Q9Y5I7 305 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 MAGI3Q5TCQ9 1506 aa7.86□□□□□ -1.15
LSM1-202ENST00000520286 CARMIL1Q5VZK9 1371 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 ARHGAP10A1A4S6 786 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 MYO1GB0I1T2 1018 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 POC1B-GALNT4F8VUJ3 575 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 MGST3O14880 152 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 SERPINC1P01008 464 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 ZNF8P17098 575 aaPredicted RBP7.85□□□□□ -1.15
LSM1-202ENST00000520286 CDH2P19022 906 aaPredicted RBP7.85□□□□□ -1.15
LSM1-202ENST00000520286 POU1F1P28069 291 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 CYP2J2P51589 502 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 POU5F1Q01860 360 aaKnown RBP7.85□□□□□ -1.15
LSM1-202ENST00000520286 BECN1Q14457 450 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 RPE65Q16518 533 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 FAM133BQ5BKY9 247 aaKnown RBP7.85□□□□□ -1.15
LSM1-202ENST00000520286 VWA5B1Q5TIE3 1220 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 MOB3CQ70IA8 216 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 SPRED1Q7Z699 444 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 TAGAPQ8N103 731 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 C17orf53Q8N3J3 647 aaPredicted RBP7.85□□□□□ -1.15
LSM1-202ENST00000520286 FAM47BQ8NA70 645 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 FAM149B1Q96BN6 582 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 FEM1CQ96JP0 617 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 SLF1Q9BQI6 1058 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 FRMD8Q9BZ67 464 aaPredicted RBP7.85□□□□□ -1.15
LSM1-202ENST00000520286 SMARCAD1Q9H4L7 1026 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 ATP8A2Q9NTI2 1148 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 BCCIPQ9P287 314 aaKnown RBP eCLIP7.85□□□□□ -1.15
LSM1-202ENST00000520286 CDH22Q9UJ99 828 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 CAPN7Q9Y6W3 813 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 MAP3K4Q9Y6R4 1608 aa7.85□□□□□ -1.15
LSM1-202ENST00000520286 TARSL2A2RTX5 802 aaKnown RBP7.84□□□□□ -1.15
LSM1-202ENST00000520286 BCAT2O15382 392 aaPredicted RBP7.84□□□□□ -1.15
LSM1-202ENST00000520286 IL1AP01583 271 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 DNTTP04053 509 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 ST6GAL1P15907 406 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 TTKP33981 857 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 EFNA5P52803 228 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 EPS8Q12929 822 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 MTA1Q13330 715 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 PUM1Q14671 1186 aaKnown RBP eCLIP7.84□□□□□ -1.15
LSM1-202ENST00000520286 CRYMQ14894 314 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 SPATS1Q496A3 300 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 PLK5Q496M5 336 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 SERTAD4-AS1Q5TG53 156 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 HECTD2Q5U5R9 776 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 TMEM268Q5VZI3 342 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 ATG9BQ674R7 924 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 KLHL35Q6PF15 583 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 PRRT2Q7Z6L0 340 aaPredicted RBP7.84□□□□□ -1.15
LSM1-202ENST00000520286 POMGNT1Q8WZA1 660 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 PIGKQ92643 395 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 KAT2BQ92831 832 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 CMTM3Q96MX0 182 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 ASB2Q96Q27 587 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 TEFMQ96QE5 360 aaKnown RBP7.84□□□□□ -1.15
LSM1-202ENST00000520286 FRG2BQ96QU4 278 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 FCRL5Q96RD9 977 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 ZNF341Q9BYN7 854 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 KAT14Q9H8E8 782 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 SCPEP1Q9HB40 452 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 INTS6Q9UL03 887 aaKnown RBP7.84□□□□□ -1.15
LSM1-202ENST00000520286 SLC8A2Q9UPR5 921 aa7.84□□□□□ -1.15
LSM1-202ENST00000520286 POLR2AP24928 1970 aaKnown RBP7.83□□□□□ -1.16
LSM1-202ENST00000520286 CXorf65A6NEN9 183 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 TTC36A6NLP5 189 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 LRRC53A6NM62 1247 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 MSI1O43347 362 aaKnown RBP7.83□□□□□ -1.16
LSM1-202ENST00000520286 SEC31AO94979 1220 aaKnown RBP7.83□□□□□ -1.16
LSM1-202ENST00000520286 DDAH2O95865 285 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 TACR3P29371 465 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 GARSP41250 739 aaKnown RBP7.83□□□□□ -1.16
LSM1-202ENST00000520286 TAF11Q15544 211 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 DPCR1Q3MIW9 517 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 RBM44Q6ZP01 1051 aaKnown RBP7.83□□□□□ -1.16
LSM1-202ENST00000520286 CAGE1Q8TC20 777 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 NEU4Q8WWR8 484 aaPredicted RBP7.83□□□□□ -1.16
LSM1-202ENST00000520286 WDFY2Q96P53 400 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 MAP7D2Q96T17 732 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 CXorf56Q9H5V9 222 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 CPNE5Q9HCH3 593 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 IL17RBQ9NRM6 502 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 GRHL1Q9NZI5 618 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 NCKIPSDQ9NZQ3 722 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 FBXO40Q9UH90 709 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 ADAM21Q9UKJ8 722 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 ADAM18Q9Y3Q7 739 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 DISP1Q96F81 1524 aa7.83□□□□□ -1.16
LSM1-202ENST00000520286 WDR7Q9Y4E6 1490 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 BIVM-ERCC5R4GMW8 1640 aa7.82□□□□□ -1.16
LSM1-202ENST00000520286 EIF3CLB5ME19 914 aaKnown RBP7.82□□□□□ -1.16
LSM1-202ENST00000520286 TARM1B6A8C7 271 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms