RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 ZNF564Q8TBZ8 553 aaPredicted RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 ARRDC3Q96B67 414 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 LRIG1Q96JA1 1093 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 CCDC42Q96M95 316 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 CSPG4P5Q96PW8 444 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 OMDQ99983 421 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 NUSAP1Q9BXS6 441 aaKnown RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 TRIM5Q9C035 493 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 SLC39A8Q9C0K1 460 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 TNKS2Q9H2K2 1166 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 DHX35Q9H5Z1 703 aaKnown RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 PCDH18Q9HCL0 1135 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 DNAAF2Q9NVR5 837 aaKnown RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 ZNHIT6Q9NWK9 470 aaKnown RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 EIF2B4Q9UI10 523 aaKnown RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 LCMT1Q9UIC8 334 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 ANAPC7Q9UJX3 599 aa9.89□□□□□ -0.83
RNF4-221ENST00000513643 CDV3Q9UKY7 258 aaKnown RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 FCF1Q9Y324 198 aaKnown RBP9.89□□□□□ -0.83
RNF4-221ENST00000513643 TPRP12270 2363 aaKnown RBP9.88□□□□□ -0.83
RNF4-221ENST00000513643 A0A1W2PR77 199 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 LRRC72A6NJI9 287 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 C4orf47A7E2U8 309 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 C1QTNF3-AMACRE9PGA6 284 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 J3KR12 359 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 PLK4O00444 970 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 BCAT2O15382 392 aaPredicted RBP9.88□□□□□ -0.83
RNF4-221ENST00000513643 LEFTY1O75610 366 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 PRNPP04156 253 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 GNSP15586 552 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 PAPOLAP51003 745 aaKnown RBP9.88□□□□□ -0.83
RNF4-221ENST00000513643 CCNHP51946 323 aaPredicted RBP9.88□□□□□ -0.83
RNF4-221ENST00000513643 HADHBP55084 474 aaKnown RBP9.88□□□□□ -0.83
RNF4-221ENST00000513643 MYLK3Q32MK0 819 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 ARSIQ5FYB1 569 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 NEK5Q6P3R8 708 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.88□□□□□ -0.83
RNF4-221ENST00000513643 PIP4P1Q86T03 277 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 TRIM69Q86WT6 500 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 TP53INP2Q8IXH6 220 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 LZTR1Q8N653 840 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 OR2AP1Q8NGE2 309 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 SLC35G2Q8TBE7 412 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 FAF2Q96CS3 445 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 HEPHQ9BQS7 1158 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 EDEM2Q9BV94 578 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 CPEB1Q9BZB8 566 aaKnown RBP9.88□□□□□ -0.83
RNF4-221ENST00000513643 ZDHHC5Q9C0B5 715 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 SPTLC3Q9NUV7 552 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 ETNK2Q9NVF9 386 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 RCOR3Q9P2K3 495 aaPredicted RBP9.88□□□□□ -0.83
RNF4-221ENST00000513643 LHX3Q9UBR4 397 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 IL36AQ9UHA7 158 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 HPCAL4Q9UM19 191 aa9.88□□□□□ -0.83
RNF4-221ENST00000513643 WNT9AO14904 365 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 SPINT1O43278 529 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 BUB1O43683 1085 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 AP1G1O43747 822 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 AKR1B10O60218 316 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 TMCC1O94876 653 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 POP4O95707 220 aaKnown RBP9.87□□□□□ -0.83
RNF4-221ENST00000513643 TPM1P09493 284 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 ITGB7P26010 798 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 NUDT1P36639 197 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 ARHGAP25P42331 645 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 GRIA4P48058 902 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 CSNK1DP48730 415 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 TAS2R40P59535 323 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 PPP2CBP62714 309 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 RACK1P63244 317 aaKnown RBP9.87□□□□□ -0.83
RNF4-221ENST00000513643 PPP2CAP67775 309 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 NSUN2Q08J23 767 aaKnown RBP eCLIP9.87□□□□□ -0.83
RNF4-221ENST00000513643 SLC14A1Q13336 389 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 TSR1Q2NL82 804 aaKnown RBP9.87□□□□□ -0.83
RNF4-221ENST00000513643 SMTNL2Q2TAL5 461 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 ATP13A4Q4VNC1 1196 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 TMEM259Q4ZIN3 620 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 ERN2Q76MJ5 926 aaKnown RBP9.87□□□□□ -0.83
RNF4-221ENST00000513643 CCDC170Q8IYT3 715 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 RGL4Q8IZJ4 473 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 ZCCHC9Q8N567 271 aaKnown RBP9.87□□□□□ -0.83
RNF4-221ENST00000513643 OR14C36Q8NHC7 312 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 HCAR2Q8TDS4 363 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 CTNNBL1Q8WYA6 563 aaPredicted RBP9.87□□□□□ -0.83
RNF4-221ENST00000513643 SPOCK2Q92563 424 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 CCDC114Q96M63 670 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 PANX2Q96RD6 677 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 ZWILCHQ9H900 591 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 PREBQ9HCU5 417 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 TM9SF3Q9HD45 589 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 TMEM9BQ9NQ34 198 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 FSCN3Q9NQT6 498 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 CTTNBP2NLQ9P2B4 639 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 HECAQ9UBI9 543 aaPredicted RBP9.87□□□□□ -0.83
RNF4-221ENST00000513643 DKK3Q9UBP4 350 aa9.87□□□□□ -0.83
RNF4-221ENST00000513643 FARP1Q9Y4F1 1045 aaPredicted RBP9.87□□□□□ -0.83
RNF4-221ENST00000513643 CHD8Q9HCK8 2581 aa9.86□□□□□ -0.83
RNF4-221ENST00000513643 TSPAN11A1L157 253 aa9.86□□□□□ -0.83
RNF4-221ENST00000513643 DCDC2BA2VCK2 349 aa9.86□□□□□ -0.83
RNF4-221ENST00000513643 ARHGAP42A6NI28 874 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms