RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 WBP4O75554 376 aaKnown RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 TLX1P31314 330 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 FASTKQ14296 549 aaKnown RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 EEF1DP3Q658K8 133 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 PRMT9Q6P2P2 845 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 TMEM132CQ8N3T6 1108 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 KYQ8NBH2 561 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 GLIS3Q8NEA6 775 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 RNPEPQ9H4A4 650 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 NXF3Q9H4D5 531 aaKnown RBP13.3□□□□□ -0.28
PTPRF-215ENST00000496447 BPIFA1Q9NP55 256 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 ZNF541Q9H0D2 1346 aa13.3□□□□□ -0.28
PTPRF-215ENST00000496447 KPNA5O15131 536 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ASNA1O43681 348 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 FGF19O95750 216 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 EIF2S1P05198 315 aaKnown RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ST13P50502 369 aaKnown RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 IRF8Q02556 426 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 TUSC3Q13454 348 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ZNF554Q86TJ5 538 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 EGFL6Q8IUX8 553 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 LRRC52Q8N7C0 313 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 UBE2E3Q969T4 207 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 TPD52L3Q96J77 140 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 CAPNS2Q96L46 248 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 SYT17Q9BSW7 474 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 PHACTR1Q9C0D0 580 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 CHST7Q9NS84 486 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 THAP1Q9NVV9 213 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 TMCO1Q9UM00 188 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ZNF510Q9Y2H8 683 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ZSCAN5CA6NGD5 496 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 IFNA16P05015 189 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ASGR1P07306 291 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 CXCR2P25025 360 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 FAM98BQ52LJ0 330 aaKnown RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 AFTPHQ6ULP2 937 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 FAM35AQ86V20 835 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 SEMA3CQ99985 751 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 PHGDHO43175 533 aaKnown RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 NFKB1P19838 968 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 C21orf59P57076 290 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 FAAP100Q0VG06 881 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 DNAJC14Q6Y2X3 702 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 FAM228AQ86W67 206 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 LRRC49Q8IUZ0 686 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 CYP4X1Q8N118 509 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 MAB21L3Q8N8X9 362 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 OR5B17Q8NGF7 314 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ATL1Q8WXF7 558 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 LRRC39Q96DD0 335 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 DEPDC7Q96QD5 511 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 RAD21L1Q9H4I0 556 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ACP6Q9NPH0 428 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 SEMA4BQ9NPR2 832 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 LCA5LO95447 670 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ZBTB48P10074 688 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 RAD23AP54725 363 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ATP1A4Q13733 1029 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 CRY2Q49AN0 593 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 STXBP5Q5T5C0 1151 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 NKAPQ8N5F7 415 aaKnown RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 RSPH1Q8WYR4 309 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 NACC2Q96BF6 587 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 NSMCE2Q96MF7 247 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 BRD9Q9H8M2 597 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 SAE1Q9UBE0 346 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ASTN2O75129 1339 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 CASZ1Q86V15 1759 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 MROH2AA6NES4 1674 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 C1orf232A0A0U1RR37 186 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 HS6ST1O60243 411 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 COX7A2P14406 83 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ARF4P18085 180 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 CDK7P50613 346 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 TBCELQ5QJ74 424 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 SLAIN1Q8ND83 568 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 UTP15Q8TED0 518 aaKnown RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 C17orf50Q8WW18 174 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 EZH1Q92800 747 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 LENG1Q96BZ8 264 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 DDX18Q9NVP1 670 aaKnown RBP13.29□□□□□ -0.28
PTPRF-215ENST00000496447 ADPRHL2Q9NX46 363 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 CROTQ9UKG9 612 aa13.29□□□□□ -0.28
PTPRF-215ENST00000496447 CHADO15335 359 aa13.28□□□□□ -0.28
PTPRF-215ENST00000496447 CBFA2T3O75081 653 aa13.28□□□□□ -0.28
PTPRF-215ENST00000496447 UMPSP11172 480 aa13.28□□□□□ -0.28
PTPRF-215ENST00000496447 S100A3P33764 101 aa13.28□□□□□ -0.28
PTPRF-215ENST00000496447 RTP1P59025 263 aa13.28□□□□□ -0.28
PTPRF-215ENST00000496447 MRPS5P82675 430 aaKnown RBP13.28□□□□□ -0.28
PTPRF-215ENST00000496447 TMEM26Q6ZUK4 368 aa13.28□□□□□ -0.28
PTPRF-215ENST00000496447 OR8D1Q8WZ84 308 aa13.28□□□□□ -0.28
PTPRF-215ENST00000496447 SEPHS2Q99611 448 aa13.28□□□□□ -0.28
PTPRF-215ENST00000496447 GPR20Q99678 358 aa13.28□□□□□ -0.28
PTPRF-215ENST00000496447 PAIP1Q9H074 479 aaKnown RBP13.28□□□□□ -0.28
PTPRF-215ENST00000496447 TAS2R14Q9NYV8 317 aa13.28□□□□□ -0.28
PTPRF-215ENST00000496447 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-215ENST00000496447 SMIM31A0A1B0GVY4 71 aa13.28□□□□□ -0.28
PTPRF-215ENST00000496447 RGS5O15539 181 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms