RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-218	ENST00000496197	BNIP3L	O60238	219 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	AOC1	P19801	751 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	CD68	P34810	354 aa	Predicted RBP	13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	MMP13	P45452	471 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	ST8SIA6	P61647	398 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	ZNF33A	Q06730	810 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	SLC20A2	Q08357	652 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	HNRNPD	Q14103	355 aa	Known RBP	13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	HNRNPA1L2	Q32P51	320 aa	Known RBP	13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	MARC1	Q5VT66	337 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	HEATR6	Q6AI08	1181 aa	Known RBP	13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	CDKL3	Q8IVW4	592 aa	Predicted RBP	13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	ZNF567	Q8N184	647 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	FAM71D	Q8N9W8	422 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	KDM1B	Q8NB78	822 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	OR2A12	Q8NGT7	310 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	MAIP1	Q8WWC4	291 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	PSKH2	Q96QS6	385 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	MGME1	Q9BQP7	344 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	GORASP1	Q9BQQ3	440 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	CINP	Q9BW66	212 aa	Predicted RBP	13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	BRD8	Q9H0E9	1235 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	DDX47	Q9H0S4	455 aa	Known RBP	13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	SLC6A17	Q9H1V8	727 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	CHRD	Q9H2X0	955 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	PRSS16	Q9NQE7	514 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	RBM22	Q9NW64	420 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	MMP17	Q9ULZ9	603 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	MYLK	Q15746	1914 aa		13.71	□□□□□ -0.22
PTPN7-218	ENST00000496197	CHURC1-FNTB	B4DL54	471 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197		F5H423	210 aa	Predicted RBP	13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	ZBTB24	O43167	697 aa	Predicted RBP	13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	PHF2	O75151	1096 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	CTSL	P07711	333 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	HOXB2	P14652	356 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	CR2	P20023	1033 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	RPS9	P46781	194 aa	Known RBP	13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	METAP1	P53582	386 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	COPA	P53621	1224 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	GEMIN4	P57678	1058 aa	Known RBP	13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	RHOA	P61586	193 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	C2orf54	Q08AI8	447 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	NIPAL4	Q0D2K0	466 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	MTAP	Q13126	283 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	RFTN1	Q14699	578 aa	Predicted RBP	13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	TEX44	Q53QW1	395 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	DRICH1	Q6PGQ1	229 aa	Predicted RBP	13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	DPY19L3	Q6ZPD9	716 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	STK40	Q8N2I9	435 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	SYNPO	Q8N3V7	929 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	TMEM105	Q8N8V8	129 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	CCDC110	Q8TBZ0	833 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	KCNV2	Q8TDN2	545 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	MAGOHB	Q96A72	148 aa	Known RBP	13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	AGAP3	Q96P47	875 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	NAP1L3	Q99457	506 aa	Predicted RBP	13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	CEP44	Q9C0F1	390 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	ATP8A1	Q9Y2Q0	1164 aa		13.7	□□□□□ -0.22
PTPN7-218	ENST00000496197	EDDM13	A0A1B0GTR0	161 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	ITGAV	P06756	1048 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	MMP2	P08253	660 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	ZSCAN5DP	P0CG00	497 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	COIL	P38432	576 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	NNMT	P40261	264 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	PAFAH1B1	P43034	410 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	RENBP	P51606	427 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	CCNH	P51946	323 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	DSC2	Q02487	901 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	CAMK2G	Q13555	558 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	ZNF235	Q14590	738 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	CRY1	Q16526	586 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	CCDC137	Q6PK04	289 aa	Known RBP	13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	ZNF572	Q7Z3I7	529 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	CACUL1	Q86Y37	369 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	PCDH20	Q8N6Y1	951 aa	Known RBP	13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	SPATA4	Q8NEY3	305 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	OR2AP1	Q8NGE2	309 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	ARRDC2	Q8TBH0	407 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	CASKIN2	Q8WXE0	1202 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	PBXIP1	Q96AQ6	731 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	ISG20	Q96AZ6	181 aa	Known RBP	13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	RTP4	Q96DX8	246 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	TEKT5	Q96M29	485 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	FAM129B	Q96TA1	746 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	RNF14	Q9UBS8	474 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	SEPT3	Q9UH03	358 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	EVL	Q9UI08	416 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	SARDH	Q9UL12	918 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	ZNF148	Q9UQR1	794 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	TTLL3	Q9Y4R7	772 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	WASF2	Q9Y6W5	498 aa		13.69	□□□□□ -0.22
PTPN7-218	ENST00000496197	NPC1	O15118	1278 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	GSR	P00390	522 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	NFKB1	P19838	968 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	MRPS25	P82663	173 aa	Known RBP	13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	SATB1	Q01826	763 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	CARD16	Q5EG05	197 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	ANKRD20A2	Q5SQ80	823 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms