RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ABCE1P61221 599 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 FOLH1Q04609 750 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 SCAPQ12770 1279 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 PDK3Q15120 406 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 PDZD4Q76G19 769 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 IPMKQ8NFU5 416 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 APBB2Q92870 758 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 SPATA16Q9BXB7 569 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 GRIP2Q9C0E4 1043 aa16.78■□□□□ 0.28
CCDC88B-210ENST00000494566 PYGLP06737 847 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 COX4I1P13073 169 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 CXCR3P49682 368 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 NOMO2Q5JPE7 1267 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 C6orf52Q5T4I8 152 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 ZNF280DQ6N043 979 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 TMEM135Q86UB9 458 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 MFN1Q8IWA4 741 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 TMEM86AQ8N2M4 240 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 CCNYL1Q8N7R7 359 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 PPP2R3CQ969Q6 453 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 SLC9A7Q96T83 725 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 MPP6Q9NZW5 540 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 SSX2IPQ9Y2D8 614 aa16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 HEMK1Q9Y5R4 338 aaPredicted RBP16.77■□□□□ 0.28
CCDC88B-210ENST00000494566 F8W8V4 182 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 SERPINE1P05121 402 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 HDCP19113 662 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 CRABP2P29373 138 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 PMLP29590 882 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 LIMK2P53671 638 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 FKBP1BP68106 108 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 GALNT2Q10471 571 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 NRF1Q16656 503 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 GRTP1Q5TC63 336 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 LAYNQ6UX15 382 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 C17orf99Q6UX52 265 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 ST13P4Q8IZP2 240 aaPredicted RBP16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 HDAC11Q96DB2 347 aa16.77■□□□□ 0.27
CCDC88B-210ENST00000494566 C9IYK1 514 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 KIF3CO14782 793 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 CSPG5O95196 566 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 C2P06681 752 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 XRCC1P18887 633 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 GJA9P57773 515 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 MPP3Q13368 585 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 GRM3Q14832 879 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 TLR1Q15399 786 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 RNF135Q8IUD6 432 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 DENND6AQ8IWF6 608 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 ACMSDQ8TDX5 336 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 TEKT5Q96M29 485 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 NAT9Q9BTE0 207 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 FTHL17Q9BXU8 183 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 SUDS3Q9H7L9 328 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 PDP2Q9P2J9 529 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 GABRQQ9UN88 632 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 UNCXA6NJT0 531 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 B4GALT3O60512 393 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 AOC1P19801 751 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 RPL10P27635 214 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 PCSK1P29120 753 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 SPRP35270 261 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 CDK7P50613 346 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 CTBP1Q13363 440 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 CYTH1Q15438 398 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 CD300LGQ6UXG3 332 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 RASAL3Q86YV0 1011 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 TDRD5Q8NAT2 981 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 URGCPQ8TCY9 931 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 RCN3Q96D15 328 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 NDNQ99608 321 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 MTG1Q9BT17 334 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 SLC2A6Q9UGQ3 507 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 PMPCBO75439 489 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 ODC1P11926 461 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 THOP1P52888 689 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 INTS6LQ5JSJ4 861 aaKnown RBP16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 SCN4BQ8IWT1 228 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 GPR152Q8TDT2 470 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 CASP10Q92851 521 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 MPP4Q96JB8 637 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 VPS39Q96JC1 886 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 NPAS2Q99743 824 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 ADAM2Q99965 735 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 DTNAQ9Y4J8 743 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 PTCH2Q9Y6C5 1203 aa16.76■□□□□ 0.27
CCDC88B-210ENST00000494566 TSPAN8P19075 237 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 CHRNA4P43681 627 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 SERPINB8P50452 374 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 MPP1Q00013 466 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 KLF10Q13118 480 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 PCDH20Q8N6Y1 951 aaKnown RBP16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 ICA1LQ8NDH6 482 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 TTC16Q8NEE8 873 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 TRIB2Q92519 343 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 ZIC5Q96T25 663 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 TASP1Q9H6P5 420 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 IRAK4Q9NWZ3 460 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 C15orf38-AP3S2A0A0A6YYH1 394 aa16.75■□□□□ 0.27
CCDC88B-210ENST00000494566 TTC24A2A3L6 582 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms