RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 TMA16Q96EY4 203 aaKnown RBP10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 COX4I2Q96KJ9 171 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MAF1Q9H063 256 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MORF4L1Q9UBU8 362 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GTF2IRD1Q9UHL9 959 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RABGEF1Q9UJ41 708 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PCDHGC3Q9UN70 934 aa10.91□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MAP3K13O43283 966 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 GPR32O75388 356 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 OR6B1O95007 311 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CCDC159P0C7I6 412 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 OR1D2P34982 312 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ALDH1A3P47895 512 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CCNG1P51959 295 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 INHBEP58166 350 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RPS6KA2Q15349 733 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NOMO2Q5JPE7 1267 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 UNC93AQ86WB7 457 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 DCP1BQ8IZD4 617 aaKnown RBP10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TSPAN14Q8NG11 270 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RFWD2Q8NHY2 731 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CALML6Q8TD86 181 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TMEM79Q9BSE2 394 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 MRPS26Q9BYN8 205 aaKnown RBP10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 PPME1Q9Y570 386 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CDY1Q9Y6F8 540 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 F5P12259 2224 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQH9 124 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 KPNA4O00629 521 aaPredicted RBP10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 POLBP06746 335 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ACRP10323 421 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NUDT2P50583 147 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RGS21Q2M5E4 152 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 OR52E8Q6IFG1 317 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TPGS1Q6ZTW0 290 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 TAS2R42Q7RTR8 314 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 LDB1Q86U70 411 aaPredicted RBP10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 CAPSLQ8WWF8 208 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 RMND5BQ96G75 393 aaPredicted RBP10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 YME1L1Q96TA2 773 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 COQ7Q99807 217 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 ADAMTS10Q9H324 1103 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 SLC24A2Q9UI40 661 aa10.9□□□□□ -0.66
MSH5-SAPCD1-207ENST00000493662 NCF1BA6NI72 391 aaPredicted RBP10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NCF1CA8MVU1 366 aaPredicted RBP10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TM9SF1O15321 606 aa10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 NCF1P14598 390 aaPredicted RBP10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 AXLP30530 894 aa10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 OR1E1P30953 314 aa10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GHRHRQ02643 423 aa10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PLOD1Q02809 727 aaPredicted RBP10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CCDC153Q494R4 210 aa10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FBXO48Q5FWF7 155 aa10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SMG8Q8ND04 991 aaKnown RBP10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 C3orf58Q8NDZ4 430 aa10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CYGBQ8WWM9 190 aa10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ELMO2Q96JJ3 720 aa10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FCRL2Q96LA5 508 aaPredicted RBP10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 APOL5Q9BWW9 433 aa10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PACSIN3Q9UKS6 424 aa10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 GPC6Q9Y625 555 aaPredicted RBP10.9□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CFAP99D6REC4 459 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FAM72CH0Y354 149 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 AKAP10O43572 662 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CHRNA1P02708 482 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CCR1P32246 355 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MAPK10P53779 464 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SLC5A3P53794 718 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SEMG2Q02383 582 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PLD1Q13393 1074 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 POM121L1PQ3SYA9 428 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TEDDM1Q5T9Z0 273 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ZNF697Q5TEC3 545 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FAM72AQ5TYM5 149 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FAM72DQ6L9T8 149 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 RINLQ6ZS11 566 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TRABD2AQ86V40 505 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 FAM72BQ86X60 149 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 RBM15BQ8NDT2 890 aaKnown RBP10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 KHSRPQ92945 711 aaKnown RBP eCLIP10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SDCCAG3Q96C92 435 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 COLEC11Q9BWP8 271 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CRTAC1Q9NQ79 661 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TMEM39AQ9NV64 488 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 LNPEPQ9UIQ6 1025 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 COQ6Q9Y2Z9 468 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PCDHGA4Q9Y5G9 962 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PABPN1LA6NDY0 278 aaKnown RBP10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 SDR42E2A6NKP2 422 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 F8W8V4 182 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 PTGESO14684 152 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TSPAN8P19075 237 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ADRA1BP35368 520 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 CTBP1Q13363 440 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 MOGSQ13724 837 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TMEM53Q6P2H8 277 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 AGMOQ6ZNB7 445 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 TMC7Q7Z402 723 aa10.89□□□□□ -0.67
MSH5-SAPCD1-207ENST00000493662 ARFGAP1Q8N6T3 406 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms