RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 HPCAL4Q9UM19 191 aa13.69□□□□□ -0.22
MSH6-208ENST00000493177 SLC27A6Q9Y2P4 619 aa13.69□□□□□ -0.22
MSH6-208ENST00000493177 ZFHX2Q9C0A1 2572 aaPredicted RBP13.68□□□□□ -0.22
MSH6-208ENST00000493177 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.68□□□□□ -0.22
MSH6-208ENST00000493177 LIASO43766 372 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 PHF2O75151 1096 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 RBP3P10745 1247 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 PABPC1P11940 636 aaKnown RBP13.68□□□□□ -0.22
MSH6-208ENST00000493177 HLA-FP30511 346 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 MPLP40238 635 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 GARSP41250 739 aaKnown RBP13.68□□□□□ -0.22
MSH6-208ENST00000493177 C2orf54Q08AI8 447 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 SLC12A1Q13621 1099 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 PUM1Q14671 1186 aaKnown RBP eCLIP13.68□□□□□ -0.22
MSH6-208ENST00000493177 EIF4HQ15056 248 aaKnown RBP13.68□□□□□ -0.22
MSH6-208ENST00000493177 CCNG2Q16589 344 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 PITRM1Q5JRX3 1037 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 RNF43Q68DV7 783 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 KIAA1324Q6UXG2 1013 aaKnown RBP13.68□□□□□ -0.22
MSH6-208ENST00000493177 ARHGAP36Q6ZRI8 547 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 ARMCX6Q7L4S7 300 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 LPCAT2Q7L5N7 544 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 APCDD1Q8J025 514 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 SPATA4Q8NEY3 305 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 WFIKKN2Q8TEU8 576 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 NSMCE1Q8WV22 266 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 RMDN1Q96DB5 314 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 ZC3H10Q96K80 434 aaKnown RBP13.68□□□□□ -0.22
MSH6-208ENST00000493177 OLFM3Q96PB7 478 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 LGMNQ99538 433 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 FERMT1Q9BQL6 677 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 FEM1AQ9BSK4 669 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 CARD6Q9BX69 1037 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 C10orf88Q9H8K7 445 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 SEPT10Q9P0V9 454 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 IPO11Q9UI26 975 aaKnown RBP13.68□□□□□ -0.22
MSH6-208ENST00000493177 DNPEPQ9ULA0 475 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 ZNF148Q9UQR1 794 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 PCDHGA5Q9Y5G8 931 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 STON1Q9Y6Q2 735 aa13.68□□□□□ -0.22
MSH6-208ENST00000493177 PTPRZ1P23471 2315 aaPredicted RBP13.67□□□□□ -0.22
MSH6-208ENST00000493177 CTAGE15A4D2H0 777 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 HACD1B0YJ81 288 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 CCDC188H7C350 402 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 CBX4O00257 560 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 NPC1O15118 1278 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 NEBLO76041 1014 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 CTAGE8P0CG41 777 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 GABRG2P18507 467 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 BCKDHBP21953 392 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 KCNA4P22459 653 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 KCNJ1P48048 391 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 XRCC4Q13426 336 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 SERINC3Q13530 473 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 PLEKHG6Q3KR16 790 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 FNDC3BQ53EP0 1204 aaKnown RBP13.67□□□□□ -0.22
MSH6-208ENST00000493177 SLC45A4Q5BKX6 768 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 PMS2CLQ68D20 193 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 TIGD7Q6NT04 549 aaPredicted RBP13.67□□□□□ -0.22
MSH6-208ENST00000493177 SERPINA13PQ6UXR4 307 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 LEKR1Q6ZMV7 388 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 GSTA5Q7RTV2 222 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 DGLUCYQ7Z3D6 616 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 CYP2U1Q7Z449 544 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 CTAGE6Q86UF2 777 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 LRRC49Q8IUZ0 686 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 CTAGE4Q8IX94 777 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 CCDC13Q8IYE1 715 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 AHI1Q8N157 1196 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 HDAC11Q96DB2 347 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 QKIQ96PU8 341 aaKnown RBP eCLIP13.67□□□□□ -0.22
MSH6-208ENST00000493177 C2orf49Q9BVC5 232 aaPredicted RBP13.67□□□□□ -0.22
MSH6-208ENST00000493177 BRD8Q9H0E9 1235 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 DDX47Q9H0S4 455 aaKnown RBP13.67□□□□□ -0.22
MSH6-208ENST00000493177 ELOVL2Q9NXB9 296 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 FBXO10Q9UK96 956 aa13.67□□□□□ -0.22
MSH6-208ENST00000493177 WASH3PC4AMC7 463 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 J3KR12 359 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 KCNN4O15554 427 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 KDELR3O43731 214 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 SNAP91O60641 907 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 ZNF217O75362 1048 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 EPHX1P07099 455 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 POLR2EP19388 210 aaKnown RBP13.66□□□□□ -0.22
MSH6-208ENST00000493177 GLDCP23378 1020 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 RBL1P28749 1068 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 CHRNA3P32297 505 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 COILP38432 576 aaPredicted RBP13.66□□□□□ -0.22
MSH6-208ENST00000493177 P2RY2P41231 377 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 IL12RB1P42701 662 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 PPIDQ08752 370 aaKnown RBP13.66□□□□□ -0.22
MSH6-208ENST00000493177 ZNF234Q14588 700 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 SF3A2Q15428 464 aaKnown RBP13.66□□□□□ -0.22
MSH6-208ENST00000493177 FUT11Q495W5 492 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 MBLAC2Q68D91 279 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 CCDC137Q6PK04 289 aaKnown RBP13.66□□□□□ -0.22
MSH6-208ENST00000493177 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.66□□□□□ -0.22
MSH6-208ENST00000493177 DCAF4L2Q8NA75 395 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 SLC35B2Q8TB61 432 aa13.66□□□□□ -0.22
MSH6-208ENST00000493177 NETO1Q8TDF5 533 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms