RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 APOA4P06727 396 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 NUMBP49757 651 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 HNRNPDQ14103 355 aaKnown RBP18.21■□□□□ 0.51
VIM-206ENST00000487938 PCID2Q5JVF3 399 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 EP400NLQ6ZTU2 488 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 LINC00523Q86TU6 105 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 KBTBD6Q86V97 674 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 LSMEM2Q8N112 164 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 CCNYL1Q8N7R7 359 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 SCAMP5Q8TAC9 235 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 SGF29Q96ES7 293 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 GBP5Q96PP8 586 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 PARK7Q99497 189 aaKnown RBP18.21■□□□□ 0.51
VIM-206ENST00000487938 RTP3Q9BQQ7 232 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 FICDQ9BVA6 458 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 PDP2Q9P2J9 529 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 PTCH2Q9Y6C5 1203 aa18.21■□□□□ 0.51
VIM-206ENST00000487938 ARL5CA6NH57 179 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 CFLARO15519 480 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 CABYRO75952 493 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 DDHD2O94830 711 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 CTSHP09668 335 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 HADHAP40939 763 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 CPT1AP50416 773 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 PDCD2Q16342 344 aaPredicted RBP18.2■□□□□ 0.5
VIM-206ENST00000487938 LRRC8EQ6NSJ5 796 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 DSELQ8IZU8 1212 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 DQX1Q8TE96 717 aaKnown RBP18.2■□□□□ 0.5
VIM-206ENST00000487938 HASPINQ8TF76 798 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 CDRT15Q96T59 188 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 AP5M1Q9H0R1 490 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 TMLHEQ9NVH6 421 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 XPR1Q9UBH6 696 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 MID2Q9UJV3 735 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 ACOT9Q9Y305 439 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 PGK1P00558 417 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 FESP07332 822 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 POLE2P56282 527 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 DLG1Q12959 904 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 RNF148Q8N7C7 305 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 STYXQ8WUJ0 223 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 TMEM209Q96SK2 561 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 PAPOLBQ9NRJ5 636 aaKnown RBP18.2■□□□□ 0.5
VIM-206ENST00000487938 NDFIP2Q9NV92 336 aa18.2■□□□□ 0.5
VIM-206ENST00000487938 AAR2Q9Y312 384 aaKnown RBP18.2■□□□□ 0.5
VIM-206ENST00000487938 TMEM233B4DJY2 109 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 PMPCBO75439 489 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 COG7P83436 770 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 PRKAA1Q13131 559 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 CYLC2Q14093 348 aaPredicted RBP18.19■□□□□ 0.5
VIM-206ENST00000487938 EML3Q32P44 896 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 DENND5AQ6IQ26 1287 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 ZNF280DQ6N043 979 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 ACAD11Q709F0 780 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 ARHGAP12Q8IWW6 846 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 ATPAF2Q8N5M1 289 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 KYQ8NBH2 561 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 RDH11Q8TC12 318 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 USP13Q92995 863 aaPredicted RBP18.19■□□□□ 0.5
VIM-206ENST00000487938 RCN3Q96D15 328 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 TSGA13Q96PP4 275 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 SLC39A8Q9C0K1 460 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 SPATS2LQ9NUQ6 558 aaKnown RBP18.19■□□□□ 0.5
VIM-206ENST00000487938 ZDHHC7Q9NXF8 308 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 NSMCE4AQ9NXX6 385 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 SFMBT1Q9UHJ3 866 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 NUDT5Q9UKK9 219 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 SCN4AP35499 1836 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 FAM95CA0A1B0GW59 222 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 TARM1B6A8C7 271 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 PSMD3O43242 534 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 AHCYL1O43865 530 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 UQCRBP14927 111 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 CCNCP24863 283 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 ARNTP27540 789 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 BRCC3P46736 316 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 ATXN3P54252 364 aaPredicted RBP18.19■□□□□ 0.5
VIM-206ENST00000487938 PKNOX1P55347 436 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 MAP2K5Q13163 448 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 MED21Q13503 144 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 CNGA3Q16281 694 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 GRAMD1BQ3KR37 738 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 GLOD4Q9HC38 313 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 CSNK1G1Q9HCP0 422 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 CDYLQ9Y232 598 aa18.19■□□□□ 0.5
VIM-206ENST00000487938 TXNDC9O14530 226 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 CACNG3O60359 315 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 ENO3P13929 434 aaPredicted RBP18.18■□□□□ 0.5
VIM-206ENST00000487938 STMN1P16949 149 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 VCLP18206 1134 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 CHRNA4P43681 627 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 ARCN1P48444 511 aaKnown RBP18.18■□□□□ 0.5
VIM-206ENST00000487938 PGFP49763 221 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 PAPOLAP51003 745 aaKnown RBP18.18■□□□□ 0.5
VIM-206ENST00000487938 RAB10P61026 200 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 FKBP1BP68106 108 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 MORN1Q5T089 497 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 TSTD2Q5T7W7 516 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 SLC30A9Q6PML9 568 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 SDCCAG8Q86SQ7 713 aaPredicted RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms