RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 AGAP3Q96P47 875 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 KRT12Q99456 494 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 VAT1Q99536 393 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 CARD6Q9BX69 1037 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 TNKS2Q9H2K2 1166 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 MFSD1Q9H3U5 465 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 L2HGDHQ9H9P8 463 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 HAUS2Q9NVX0 235 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 KLHL8Q9P2G9 620 aaPredicted RBP12.44□□□□□ -0.42
SDC1-206ENST00000482879 SUN2Q9UH99 717 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 TRHDEQ9UKU6 1024 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 STON1Q9Y6Q2 735 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 C5orf60A6NFR6 353 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 ZBTB24O43167 697 aaPredicted RBP12.43□□□□□ -0.42
SDC1-206ENST00000482879 BNIP3LO60238 219 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 HLA-DQB2P05538 268 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 CHRM1P11229 460 aaPredicted RBP12.43□□□□□ -0.42
SDC1-206ENST00000482879 ETS1P14921 441 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 PRKCHP24723 683 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 NTSR1P30989 418 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 HSPA9P38646 679 aaKnown RBP12.43□□□□□ -0.42
SDC1-206ENST00000482879 RECQLP46063 649 aaPredicted RBP12.43□□□□□ -0.42
SDC1-206ENST00000482879 NRLP54845 237 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 MAXP61244 160 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 SNRPD1P62314 119 aaKnown RBP12.43□□□□□ -0.42
SDC1-206ENST00000482879 FZD5Q13467 585 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 ANKRD20A2Q5SQ80 823 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 ANKRD20A1Q5TYW2 823 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 ANKRD20A3Q5VUR7 823 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 Q6ZVU0 165 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 TRMT11Q7Z4G4 463 aaKnown RBP12.43□□□□□ -0.42
SDC1-206ENST00000482879 ZNF567Q8N184 647 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 SYNPOQ8N3V7 929 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 PGBD5Q8N414 524 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 PCDH20Q8N6Y1 951 aaKnown RBP12.43□□□□□ -0.42
SDC1-206ENST00000482879 CNTD1Q8N815 330 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 ZNF366Q8N895 744 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 CCDC89Q8N998 374 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 IL17RCQ8NAC3 791 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 FLCNQ8NFG4 579 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 RPLP0P6Q8NHW5 317 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 CCDC110Q8TBZ0 833 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 FRS2Q8WU20 508 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 ZNF419Q96HQ0 510 aaPredicted RBP12.43□□□□□ -0.42
SDC1-206ENST00000482879 TEKT5Q96M29 485 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 SPATA13Q96N96 652 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 PSKH2Q96QS6 385 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 OSBPL6Q9BZF3 934 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 TM6SF2Q9BZW4 377 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 TMEM245Q9H330 911 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 MTG2Q9H4K7 406 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 LHX3Q9UBR4 397 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 PCYOX1Q9UHG3 505 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 AMACRQ9UHK6 382 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 ATP8A1Q9Y2Q0 1164 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 TTLL3Q9Y4R7 772 aa12.43□□□□□ -0.42
SDC1-206ENST00000482879 TRIOO75962 3097 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 EDDM13A0A1B0GTR0 161 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 TARSL2A2RTX5 802 aaKnown RBP12.42□□□□□ -0.42
SDC1-206ENST00000482879 MUSKO15146 869 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 OPHN1O60890 802 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 ZNF821O75541 412 aaPredicted RBP12.42□□□□□ -0.42
SDC1-206ENST00000482879 GCATO75600 419 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 ECEL1O95672 775 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 IGSF6O95976 241 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 GAS8O95995 478 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 GSRP00390 522 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 KRT14P02533 472 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 EPHX1P07099 455 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 ZSCAN5DPP0CG00 497 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 ACTN2P35609 894 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 RGRP47804 291 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 SCNN1BP51168 640 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 NSUN2Q08J23 767 aaKnown RBP eCLIP12.42□□□□□ -0.42
SDC1-206ENST00000482879 ENPP2Q13822 863 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 P3H1Q32P28 736 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 HNRNPA1L2Q32P51 320 aaKnown RBP12.42□□□□□ -0.42
SDC1-206ENST00000482879 HSF5Q4G112 596 aaPredicted RBP12.42□□□□□ -0.42
SDC1-206ENST00000482879 CARD16Q5EG05 197 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 ATXN7L2Q5T6C5 722 aaPredicted RBP12.42□□□□□ -0.42
SDC1-206ENST00000482879 ITPRIPL1Q6GPH6 555 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 Q6ZS52 159 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 ARHGEF18Q6ZSZ5 1173 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 PRUNE1Q86TP1 453 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 RYBPQ8N488 228 aaPredicted RBP12.42□□□□□ -0.42
SDC1-206ENST00000482879 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.42□□□□□ -0.42
SDC1-206ENST00000482879 TXNDC5Q8NBS9 432 aaKnown RBP12.42□□□□□ -0.42
SDC1-206ENST00000482879 PJA1Q8NG27 643 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 OR2AP1Q8NGE2 309 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 PTPRN2Q92932 1015 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 RTP4Q96DX8 246 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 EXOC2Q96KP1 924 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 GDAP1L1Q96MZ0 367 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 MGME1Q9BQP7 344 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 GLOD4Q9HC38 313 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 SIT1Q9Y3P8 196 aa12.42□□□□□ -0.42
SDC1-206ENST00000482879 FARP1Q9Y4F1 1045 aaPredicted RBP12.42□□□□□ -0.42
SDC1-206ENST00000482879 TTC24A2A3L6 582 aaPredicted RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 TMEM221A6NGB7 291 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 M0R296 226 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms