RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 DEPDC1Q5TB30 811 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 C12orf60Q5U649 245 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 FAM160B1Q5W0V3 765 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 CENPPQ6IPU0 288 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 ARMC9Q7Z3E5 817 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 GDF7Q7Z4P5 450 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 PPP1R32Q7Z5V6 425 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 DNAJC10Q8IXB1 793 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 CCDC65Q8IXS2 484 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 FAM9CQ8IZT9 166 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 CFAP52Q8N1V2 620 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 TRIML2Q8N7C3 387 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 BANPQ8N9N5 519 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 PDPRQ8NCN5 879 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 RASSF8Q8NHQ8 419 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 KIF18AQ8NI77 898 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 ZNF671Q8TAW3 534 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 METTL6Q8TCB7 284 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 SLC22A17Q8WUG5 538 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 RAPGEF5Q92565 580 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 PRCCQ92733 491 aaPredicted RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 RMDN1Q96DB5 314 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 EDC3Q96F86 508 aaKnown RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 MARS2Q96GW9 593 aaKnown RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 APOPT1Q96IL0 206 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 SNX22Q96L94 193 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 PRICKLE1Q96MT3 831 aaPredicted RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 TTC25Q96NG3 672 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 NEU1Q99519 415 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 PRPF18Q99633 342 aaKnown RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 SMOQ99835 787 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 DDX50Q9BQ39 737 aaKnown RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 UTP14AQ9BVJ6 771 aaKnown RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 SLC46A2Q9BY10 475 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.29□□□□□ -1.72
VPS41-212ENST00000482217 PDCL3Q9H2J4 239 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 MUC13Q9H3R2 512 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 ZNF703Q9H7S9 590 aaPredicted RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 MMRN2Q9H8L6 949 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 CHODLQ9H9P2 273 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 SMURF2Q9HAU4 748 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 TMEM165Q9HC07 324 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 LTB4R2Q9NPC1 389 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 RPRD1BQ9NQG5 326 aaKnown RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 PCDHB16Q9NRJ7 776 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 ATAD3AQ9NVI7 634 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 DDX43Q9NXZ2 648 aaKnown RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 WDR37Q9Y2I8 494 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 RPH3AQ9Y2J0 694 aaPredicted RBP4.29□□□□□ -1.72
VPS41-212ENST00000482217 NAALAD2Q9Y3Q0 740 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 CHST2Q9Y4C5 530 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 CLCA3PQ9Y6N3 262 aa4.29□□□□□ -1.72
VPS41-212ENST00000482217 MROH5Q6ZUA9 1318 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 A0A087WWL8 130 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 RNF103-CHMP3A0A140T963 221 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 NPIPB15A6NHN6 443 aaPredicted RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 KPNA7A9QM74 516 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 E9PLN8 166 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 H0YCG3 227 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 STMND1H3BQB6 276 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 MYO1CO00159 1063 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 RNF103O00237 685 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 PPEF2O14830 753 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 IFIT3O14879 490 aaKnown RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 RPS6KA4O75676 772 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 SCAF4O95104 1147 aaKnown RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 UNC5CO95185 931 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 MT-ND5P03915 603 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 TUBBP07437 444 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 ITGA2BP08514 1039 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 TPM1P09493 284 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 SUPT20HL2P0C7V6 817 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 CYP2C9P11712 490 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 ACTN1P12814 892 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 PRG2P13727 222 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 CSF2RAP15509 400 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 CAPN2P17655 700 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 KCNA5P22460 613 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 FDXRP22570 491 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 CPT2P23786 658 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 ADSSP30520 456 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 ICAM3P32942 547 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 GRK5P34947 590 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 PPARGP37231 505 aaPredicted RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 USP8P40818 1118 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 VIPR2P41587 438 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 EPS15P42566 896 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 ZNF81P51508 661 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 GBX2P52951 348 aaPredicted RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 METAP1P53582 386 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 AP3M2P53677 418 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 PTTG1IPP53801 180 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 CASP9P55211 416 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 WNT3P56703 355 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 ITIH3Q06033 890 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 PLD1Q13393 1074 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 TOB2Q14106 344 aaPredicted RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 MORF4L2Q15014 288 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 GPR68Q15743 365 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 PDCD4Q53EL6 469 aaKnown RBP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms