RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PGAM5Q96HS1 289 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 CMTM3Q96MX0 182 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 TIMP4Q99727 224 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 H2AFJQ9BTM1 129 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 FTOQ9C0B1 505 aaKnown RBP eCLIP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 KAT14Q9H8E8 782 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 CYP4F11Q9HBI6 524 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 FBRSL1Q9HCM7 1045 aaKnown RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 BABAM1Q9NWV8 329 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 SUCLA2Q9P2R7 463 aaPredicted RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 CFDP1Q9UEE9 299 aaPredicted RBP5.46□□□□□ -1.54
UPF3B-203ENST00000478840 MST1RQ04912 1400 aa5.46□□□□□ -1.54
UPF3B-203ENST00000478840 CBY3A6NI87 242 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 LRRC53A6NM62 1247 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 CDRT15L2A8MXV6 281 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 POC1B-GALNT4F8VUJ3 575 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 MASP2O00187 686 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 LIASO43766 372 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 HOXB5P09067 269 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 IRF1P10914 325 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 WT1P19544 449 aaPredicted RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 YWHAZP63104 245 aaKnown RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 SIM1P81133 766 aaPredicted RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 TAF11Q15544 211 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 LSM12Q3MHD2 195 aaKnown RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 ALDH1L2Q3SY69 923 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 FAM153CQ494X1 144 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 ARL13AQ5H913 290 aaPredicted RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 ARMC3Q5W041 872 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 NAA16Q6N069 864 aaPredicted RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 RBM44Q6ZP01 1051 aaKnown RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 RASAL3Q86YV0 1011 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 UEVLDQ8IX04 471 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 WIPF2Q8TF74 440 aaPredicted RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 NEU4Q8WWR8 484 aaPredicted RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 PSPC1Q8WXF1 523 aaKnown RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 IP6K1Q92551 441 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 CCDC34Q96HJ3 373 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 TTC14Q96N46 770 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 YME1L1Q96TA2 773 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 BAG1Q99933 345 aaPredicted RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 SMARCAD1Q9H4L7 1026 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 POLR1BQ9H9Y6 1135 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 ARL8BQ9NVJ2 186 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 FBXO4Q9UKT5 387 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 TNFSF13BQ9Y275 285 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 TTBK1Q5TCY1 1321 aaPredicted RBP5.45□□□□□ -1.54
UPF3B-203ENST00000478840 ADGRF5Q8IZF2 1346 aa5.45□□□□□ -1.54
UPF3B-203ENST00000478840 A0A1W2PQ09 198 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 UBE2Q2LH0YL09 131 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 SCAMP1O15126 338 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 SEC31AO94979 1220 aaKnown RBP5.44□□□□□ -1.54
UPF3B-203ENST00000478840 HNRNPCP07910 306 aaKnown RBP eCLIP5.44□□□□□ -1.54
UPF3B-203ENST00000478840 MAKP20794 623 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 POU1F1P28069 291 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 EIF2DP41214 584 aaKnown RBP5.44□□□□□ -1.54
UPF3B-203ENST00000478840 CDH8P55286 799 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 ROR1Q01973 937 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 RNPS1Q15287 305 aaKnown RBP5.44□□□□□ -1.54
UPF3B-203ENST00000478840 EDRF1Q3B7T1 1238 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 KIAA1755Q5JYT7 1200 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 CC2D1BQ5T0F9 858 aaKnown RBP5.44□□□□□ -1.54
UPF3B-203ENST00000478840 TMEM268Q5VZI3 342 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 TBC1D9BQ66K14 1250 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 SERPINA13PQ6UXR4 307 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 FAM83HQ6ZRV2 1179 aaPredicted RBP5.44□□□□□ -1.54
UPF3B-203ENST00000478840 CHST9Q7L1S5 443 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 ADGRA1Q86SQ6 560 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 C17orf53Q8N3J3 647 aaPredicted RBP5.44□□□□□ -1.54
UPF3B-203ENST00000478840 ZNF398Q8TD17 642 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 WDFY2Q96P53 400 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 FCRL5Q96RD9 977 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 IFT27Q9BW83 186 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 MAK16Q9BXY0 300 aaKnown RBP5.44□□□□□ -1.54
UPF3B-203ENST00000478840 PLEKHA4Q9H4M7 779 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 SH2D4AQ9H788 454 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 SH3GLB2Q9NR46 395 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 ABI3Q9P2A4 366 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 CHORDC1Q9UHD1 332 aaPredicted RBP5.44□□□□□ -1.54
UPF3B-203ENST00000478840 HAO1Q9UJM8 370 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 MKLN1Q9UL63 735 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 NOL7Q9UMY1 257 aaKnown RBP5.44□□□□□ -1.54
UPF3B-203ENST00000478840 PCDHGB5Q9Y5G0 923 aa5.44□□□□□ -1.54
UPF3B-203ENST00000478840 TARSL2A2RTX5 802 aaKnown RBP5.43□□□□□ -1.54
UPF3B-203ENST00000478840 H7C0S8 307 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 SH2B2O14492 632 aaPredicted RBP5.43□□□□□ -1.54
UPF3B-203ENST00000478840 USP12O75317 370 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 CBX6O95503 412 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 PRR35P0CG20 571 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 MCM3P25205 808 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 COPB2P35606 906 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 CYP2J2P51589 502 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 ARSFP54793 590 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 CEBPZQ03701 1054 aaKnown RBP5.43□□□□□ -1.54
UPF3B-203ENST00000478840 CDC16Q13042 620 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 OLIG2Q13516 323 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 HIST2H2ACQ16777 129 aaPredicted RBP5.43□□□□□ -1.54
UPF3B-203ENST00000478840 CCDC184Q52MB2 194 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 AWAT1Q58HT5 328 aa5.43□□□□□ -1.54
UPF3B-203ENST00000478840 GPR139Q6DWJ6 353 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms