RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 RCN3Q96D15 328 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 SENP6Q9GZR1 1112 aaPredicted RBP11.17□□□□□ -0.62
COL27A1-204ENST00000477421 SEMA4BQ9NPR2 832 aaPredicted RBP11.17□□□□□ -0.62
COL27A1-204ENST00000477421 CRLS1Q9UJA2 301 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 LRCH1Q9Y2L9 728 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 HDAC3O15379 428 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 ITM2AO43736 263 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 PFDN1O60925 122 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 CDK7P50613 346 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 SLC10A2Q12908 348 aaPredicted RBP11.17□□□□□ -0.62
COL27A1-204ENST00000477421 TUSC3Q13454 348 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 FASTKQ14296 549 aaKnown RBP11.17□□□□□ -0.62
COL27A1-204ENST00000477421 NRF1Q16656 503 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 ARL13AQ5H913 290 aaPredicted RBP11.17□□□□□ -0.62
COL27A1-204ENST00000477421 NOMO2Q5JPE7 1267 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 SLC30A9Q6PML9 568 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 ARCQ7LC44 396 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 SETD3Q86TU7 594 aaPredicted RBP11.17□□□□□ -0.62
COL27A1-204ENST00000477421 ARHGAP18Q8N392 663 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 ZNF781Q8N8C0 355 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 ZNF333Q96JL9 665 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 ZNF184Q99676 751 aaPredicted RBP11.17□□□□□ -0.62
COL27A1-204ENST00000477421 ARHGEF3Q9NR81 526 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 TRMT13Q9NUP7 481 aaKnown RBP11.17□□□□□ -0.62
COL27A1-204ENST00000477421 FZD10Q9ULW2 581 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 WASF2Q9Y6W5 498 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 ATXN2Q99700 1313 aaKnown RBP11.17□□□□□ -0.62
COL27A1-204ENST00000477421 SKIV2L2P42285 1042 aaKnown RBP11.17□□□□□ -0.62
COL27A1-204ENST00000477421 RAB27AP51159 221 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 KCNK10P57789 538 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 RHOAP61586 193 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 ARHGAP17Q68EM7 881 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 CAND1Q86VP6 1230 aaKnown RBP11.17□□□□□ -0.62
COL27A1-204ENST00000477421 OR6K2Q8NGY2 324 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 USP29Q9HBJ7 922 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 CASS4Q9NQ75 786 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 NMRK1Q9NWW6 199 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 TRPM5Q9NZQ8 1165 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 MOSPD1Q9UJG1 213 aa11.17□□□□□ -0.62
COL27A1-204ENST00000477421 MAGEA13PA6NCF6 341 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 FAM72CH0Y354 149 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 ZNF189O75820 626 aaPredicted RBP11.16□□□□□ -0.62
COL27A1-204ENST00000477421 COX4I1P13073 169 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 IRF9Q00978 393 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 FAM72AQ5TYM5 149 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 FAM72DQ6L9T8 149 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 FAM228AQ86W67 206 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 FAM72BQ86X60 149 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 TRIM15Q9C019 465 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 BRD8Q9H0E9 1235 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 CXCL16Q9H2A7 254 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 CCDC134Q9H6E4 229 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 GLOD4Q9HC38 313 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 SCUBE2Q9NQ36 999 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 MRPL40Q9NQ50 206 aaKnown RBP11.16□□□□□ -0.62
COL27A1-204ENST00000477421 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.16□□□□□ -0.62
COL27A1-204ENST00000477421 PTCH2Q9Y6C5 1203 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 PAPPAQ13219 1627 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 SAC3D1A6NKF1 404 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 BTN3A1O00481 513 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 KPNA6O60684 536 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 SMNDC1O75940 238 aaKnown RBP eCLIP11.16□□□□□ -0.622e-11■□□□□ 8.3
COL27A1-204ENST00000477421 AP2A1O95782 977 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 CHRNGP07510 517 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 SERPINA6P08185 405 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 CYP3A5P20815 502 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 CDH5P33151 784 aaPredicted RBP11.16□□□□□ -0.62
COL27A1-204ENST00000477421 RAB10P61026 200 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 TAF10Q12962 218 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 TMED1Q13445 227 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 KCNA10Q16322 511 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 SWT1Q5T5J6 900 aaKnown RBP11.16□□□□□ -0.62
COL27A1-204ENST00000477421 THEMIS2Q5TEJ8 643 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 ACMSDQ8TDX5 336 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 PAAF1Q9BRP4 392 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 THUMPD3Q9BV44 507 aaKnown RBP11.16□□□□□ -0.62
COL27A1-204ENST00000477421 GATA5Q9BWX5 397 aaPredicted RBP11.16□□□□□ -0.62
COL27A1-204ENST00000477421 NMRK2Q9NPI5 230 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 NKX1-2Q9UD57 310 aaPredicted RBP11.16□□□□□ -0.62
COL27A1-204ENST00000477421 BCORQ6W2J9 1755 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 IGKV6-21A0A0C4DH24 114 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 TLR5O60602 858 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 SIN3BO75182 1162 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 FKBP6O75344 327 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 VPS26AO75436 327 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 RAD51Q06609 339 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 INCA1Q0VD86 236 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 ZNF792Q3KQV3 632 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 LPCAT4Q643R3 524 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 DENND1CQ8IV53 801 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 CRYBG2Q8N1P7 616 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 MIER2Q8N344 545 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 CXorf38Q8TB03 319 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 SNX19Q92543 992 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 NMD3Q96D46 503 aaKnown RBP11.16□□□□□ -0.62
COL27A1-204ENST00000477421 SEPHS2Q99611 448 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 FTHL17Q9BXU8 183 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 KLHL4Q9C0H6 718 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 ADNPQ9H2P0 1102 aa11.16□□□□□ -0.62
COL27A1-204ENST00000477421 WDR41Q9HAD4 459 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms