RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 CARD16Q5EG05 197 aa18.93■□□□□ 0.62
COL7A1-209ENST00000474432 RWDD4Q6NW29 188 aaKnown RBP18.93■□□□□ 0.62
COL7A1-209ENST00000474432 NEK5Q6P3R8 708 aa18.93■□□□□ 0.62
COL7A1-209ENST00000474432 ERN2Q76MJ5 926 aaKnown RBP18.93■□□□□ 0.62
COL7A1-209ENST00000474432 IQCHQ86VS3 1027 aa18.93■□□□□ 0.62
COL7A1-209ENST00000474432 KLK6Q92876 244 aa18.93■□□□□ 0.62
COL7A1-209ENST00000474432 SKA1Q96BD8 255 aa18.93■□□□□ 0.62
COL7A1-209ENST00000474432 TBC1D31Q96DN5 1066 aa18.93■□□□□ 0.62
COL7A1-209ENST00000474432 SEPT11Q9NVA2 429 aaKnown RBP18.93■□□□□ 0.62
COL7A1-209ENST00000474432 MYO6Q9UM54 1294 aa18.93■□□□□ 0.62
COL7A1-209ENST00000474432 GOLGA4Q13439 2230 aaKnown RBP18.92■□□□□ 0.62
COL7A1-209ENST00000474432 PRAMEF26H0Y7S4 382 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 TAF4O00268 1085 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 PRLRP16471 622 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 EPHA8P29322 1005 aaPredicted RBP18.92■□□□□ 0.62
COL7A1-209ENST00000474432 L1CAMP32004 1257 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 CCNHP51946 323 aaPredicted RBP18.92■□□□□ 0.62
COL7A1-209ENST00000474432 IQCB1Q15051 598 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 TMEM259Q4ZIN3 620 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 SETMARQ53H47 684 aaPredicted RBP18.92■□□□□ 0.62
COL7A1-209ENST00000474432 SFMBT2Q5VUG0 894 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 DNAJC24Q6P3W2 148 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 TMPRSS7Q7RTY8 843 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 SLFN11Q7Z7L1 901 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 HORMAD1Q86X24 394 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 DNAAF5Q86Y56 855 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 MARCH9Q86YJ5 346 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 PLPP6Q8IY26 295 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 ISG20Q96AZ6 181 aaKnown RBP18.92■□□□□ 0.62
COL7A1-209ENST00000474432 NAP1L5Q96NT1 182 aaPredicted RBP18.92■□□□□ 0.62
COL7A1-209ENST00000474432 MCEEQ96PE7 176 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 HEPHQ9BQS7 1158 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 KLC2Q9H0B6 622 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 MAGEH1Q9H213 219 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 CAAP1Q9H8G2 361 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 FZD10Q9ULW2 581 aa18.92■□□□□ 0.62
COL7A1-209ENST00000474432 LRRC53A6NM62 1247 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 SLC31A1O15431 190 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 GKP32189 559 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 OVGP1Q12889 678 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 FGL2Q14314 439 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 SLC45A4Q5BKX6 768 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 SEL1L3Q68CR1 1132 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 LEKR1Q6ZMV7 388 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 ARFGAP1Q8N6T3 406 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 RTL3Q8N8U3 475 aaKnown RBP18.91■□□□□ 0.62
COL7A1-209ENST00000474432 ZCCHC14Q8WYQ9 949 aaKnown RBP18.91■□□□□ 0.62
COL7A1-209ENST00000474432 CNPY3Q9BT09 278 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 TM6SF2Q9BZW4 377 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 TTYH3Q9C0H2 523 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 NAT10Q9H0A0 1025 aaKnown RBP18.91■□□□□ 0.62
COL7A1-209ENST00000474432 FZD3Q9NPG1 666 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 FREM2Q5SZK8 3169 aa18.91■□□□□ 0.62
COL7A1-209ENST00000474432 ANKRD11Q6UB99 2663 aaPredicted RBP18.9■□□□□ 0.62
COL7A1-209ENST00000474432 A0A1B0GTH6 734 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 GOLGA8CPA6NN73 597 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 SRRM3A6NNA2 597 aaPredicted RBP18.9■□□□□ 0.62
COL7A1-209ENST00000474432 SPINT1O43278 529 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 KDELR3O43731 214 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 RAMP2O60895 175 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 ADRB3P13945 408 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 ITGB7P26010 798 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 ETFBP38117 255 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 RECQLP46063 649 aaPredicted RBP18.9■□□□□ 0.62
COL7A1-209ENST00000474432 DNA2P51530 1060 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 MAMLD1Q13495 774 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 STAT4Q14765 748 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 CAVIN1Q6NZI2 390 aaKnown RBP18.9■□□□□ 0.62
COL7A1-209ENST00000474432 PARS2Q7L3T8 475 aaKnown RBP18.9■□□□□ 0.62
COL7A1-209ENST00000474432 OR6K2Q8NGY2 324 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 MYOCQ99972 504 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 HECAQ9UBI9 543 aaPredicted RBP18.9■□□□□ 0.62
COL7A1-209ENST00000474432 FADS3Q9Y5Q0 445 aa18.9■□□□□ 0.62
COL7A1-209ENST00000474432 TDRD6O60522 2096 aaKnown RBP18.89■□□□□ 0.62
COL7A1-209ENST00000474432 A0A1W2PQC6 194 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 WASH4PA8MWX3 477 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 YKT6O15498 198 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 ITGAVP06756 1048 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 TNFAIP3P21580 790 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 ABL2P42684 1182 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 ZNF165P49910 485 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 NEK3P51956 506 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 POLD3Q15054 466 aaPredicted RBP18.89■□□□□ 0.61
COL7A1-209ENST00000474432 PLEKHA7Q6IQ23 1121 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 SCYL2Q6P3W7 929 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 GCNT7Q6ZNI0 430 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 ZNF571Q7Z3V5 609 aaPredicted RBP18.89■□□□□ 0.61
COL7A1-209ENST00000474432 EID2Q8N6I1 236 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 TSC1Q92574 1164 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 KLHDC7BQ96G42 594 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 VCPIP1Q96JH7 1222 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 DYRK4Q9NR20 520 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 AIPL1Q9NZN9 384 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 FTSJ1Q9UET6 329 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 KNTC1P50748 2209 aa18.89■□□□□ 0.61
COL7A1-209ENST00000474432 APC2O95996 2303 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 SMTNL1A8MU46 457 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 RAD51BO15315 384 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 ATMINO43313 823 aaPredicted RBP18.88■□□□□ 0.61
COL7A1-209ENST00000474432 AP1G1O43747 822 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms