RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ARL13BQ3SXY8 428 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 C5orf22Q49AR2 442 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 FAM69BQ5VUD6 431 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 IZUMO3Q5VZ72 239 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D9BQ66K14 1250 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 FBXO38Q6PIJ6 1188 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 C1orf228Q6PIY5 440 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 TXLNBQ8N3L3 684 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 KBTBD3Q8NAB2 608 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 RFWD2Q8NHY2 731 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 DEPTORQ8TB45 409 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 KIAA1191Q96A73 305 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 C18orf8Q96DM3 657 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 FRG2BQ96QU4 278 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 EVA1AQ9H8M9 152 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 UBTD1Q9HAC8 227 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 NECTIN3Q9NQS3 549 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 SEL1LQ9UBV2 794 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 CDH22Q9UJ99 828 aa3.46□□□□□ -1.86
CCDC88A-212ENST00000474059 FAM90A18PA6NE21 464 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 FAM90A16PA6NEW6 464 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 AGAP5A6NIR3 686 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 FAM90A9PA6NNJ1 464 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 FAM90A5PA8MXJ8 464 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 TIMM23O14925 209 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 ITM2AO43736 263 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 FGF18O76093 207 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 HEXIM1O94992 359 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 DDAH2O95865 285 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 AMBPP02760 352 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 FAM90A15PP0C7V4 464 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 FAM90A14PP0C7W9 464 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 ZNF883P0CG24 379 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 FGF5P12034 268 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 HOXB9P17482 250 aaPredicted RBP3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 ABCB4P21439 1286 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 ATP12AP54707 1039 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 BTKQ06187 659 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 CHAF1AQ13111 956 aaPredicted RBP3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 DHX34Q14147 1143 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 RAB30Q15771 203 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 MTFR2Q6P444 385 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 SERPINA11Q86U17 422 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 SMC5Q8IY18 1101 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 EXOC8Q8IYI6 725 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 ZDHHC23Q8IYP9 409 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 ENDOVQ8N8Q3 282 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 WDSUB1Q8N9V3 476 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 ZNF485Q8NCK3 441 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 VPS37AQ8NEZ2 397 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 NEK9Q8TD19 979 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 BRI3BPQ8WY22 251 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 TMEM18Q96B42 140 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 GFM1Q96RP9 751 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 POLR3GLQ9BT43 218 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 MYH16Q9H6N6 1097 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 CERS4Q9HA82 394 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 OSGIN2Q9Y236 505 aa3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 COL2A1P02458 1487 aaPredicted RBP3.45□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D3DA0A087WVF3 549 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D3IA0A087WXS9 549 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D3EA0A087X179 549 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D3KA0A087X1G2 549 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D3BA6NDS4 549 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D3FA6NER0 549 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 DDTLA6NHG4 134 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 MBD3L5A6NJ08 208 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 C17orf100A8MU93 164 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D3LB9A6J9 549 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 J3KR12 359 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 IFRD1O00458 451 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 KIF1CO43896 1103 aaKnown RBP3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 EIF3JO75822 258 aaKnown RBP3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D3HP0C7X1 549 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 ENO3P13929 434 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TIMP3P35625 211 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 ADORA2A-AS1P86434 159 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 ST3GAL1Q11201 340 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 XKR9Q5GH70 373 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 LCE3EQ5T5B0 92 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D3GQ6DHY5 549 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D3CQ6IPX1 549 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 PLEKHA7Q6IQ23 1121 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 FOXL2NBQ6ZUU3 175 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TUBA1AQ71U36 451 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 EXOC3L1Q86VI1 746 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TBC1D3Q8IZP1 549 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 ANKRD44Q8N8A2 993 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 ENAHQ8N8S7 591 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 IPO4Q8TEX9 1081 aaKnown RBP3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 C2CD4CQ8TF44 421 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 CD101Q93033 1021 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TUBA1CQ9BQE3 449 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 TMEM120AQ9BXJ8 343 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 LHPPQ9H008 270 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 ZNF696Q9H7X3 374 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 EBF2Q9HAK2 575 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 PTPRHQ9HD43 1115 aa3.44□□□□□ -1.86
CCDC88A-212ENST00000474059 CDC23Q9UJX2 597 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms