RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	ZWILCH	Q9H900	591 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	NDFIP2	Q9NV92	336 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	HECA	Q9UBI9	543 aa	Predicted RBP	11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	SARDH	Q9UL12	918 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	TPX2	Q9ULW0	747 aa	Known RBP	11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	ANKRD6	Q9Y2G4	727 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	KNL1	Q8NG31	2342 aa		11.75	□□□□□ -0.53
CPNE1-222	ENST00000473373	TCRBV5S1A1T	A0A578	114 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	ARHGAP42	A6NI28	874 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	RASA4B	C9J798	803 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	DFFA	O00273	331 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	RASA4	O43374	803 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	PLRG1	O43660	514 aa	Known RBP	11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	LEFTY1	O75610	366 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	IGSF6	O95976	241 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	GYPC	P04921	128 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	CSRP1	P21291	193 aa	Known RBP	11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	CD38	P28907	300 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	MIP	P30301	263 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	DRD3	P35462	400 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	GJC1	P36383	396 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	CCR5	P51681	352 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	CCNH	P51946	323 aa	Predicted RBP	11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	NEK3	P51956	506 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	METAP1	P53582	386 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	YBEY	P58557	167 aa	Predicted RBP	11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	ARF5	P84085	180 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	OGDH	Q02218	1023 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	STAT4	Q14765	748 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	HLA-B	Q31612	363 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	INAVA	Q3KP66	663 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	PPP1R15B	Q5SWA1	713 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	MANEAL	Q5VSG8	457 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	SPECC1L	Q69YQ0	1117 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	ALKBH5	Q6P6C2	394 aa	Known RBP	11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	DPY19L3	Q6ZPD9	716 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	TMIE	Q8NEW7	156 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	OR2A12	Q8NGT7	310 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	OR6K2	Q8NGY2	324 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	KLK6	Q92876	244 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	GDAP1L1	Q96MZ0	367 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	MYOC	Q99972	504 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	SYT11	Q9BT88	431 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	NUP85	Q9BW27	656 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	KDM4C	Q9H3R0	1056 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	SP110	Q9HB58	689 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	TM7SF3	Q9NS93	570 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	ANAPC7	Q9UJX3	599 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	PPM1H	Q9ULR3	514 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	SNX11	Q9Y5W9	270 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	ACTL7A	Q9Y615	435 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	CABIN1	Q9Y6J0	2220 aa		11.74	□□□□□ -0.53
CPNE1-222	ENST00000473373	CEP295	Q9C0D2	2601 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	TMEM191C	A6NGB0	347 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	EIF3CL	B5ME19	914 aa	Known RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373		H3BRJ5	948 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	SLC31A1	O15431	190 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	KDELR3	O43731	214 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	AKR1B10	O60218	316 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	SH3BP5	O60239	455 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	MAGEC1	O60732	1142 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	RNGTT	O60942	597 aa	Known RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	TMCC1	O94876	653 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	IGHV4-34	P06331	123 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	CTSL	P07711	333 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	HTR7	P34969	479 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	CCT8	P50990	548 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	PPP2CB	P62714	309 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	PPP2CA	P67775	309 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	SIM1	P81133	766 aa	Predicted RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	IL9R	Q01113	521 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	SLC14A1	Q13336	389 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	HNRNPD	Q14103	355 aa	Known RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	PIGH	Q14442	188 aa	Predicted RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	KRT81	Q14533	505 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	HADH	Q16836	314 aa	Known RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	KIF19	Q2TAC6	998 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	SMTNL2	Q2TAL5	461 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	PARP15	Q460N3	678 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	AGBL4	Q5VU57	503 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	ERN2	Q76MJ5	926 aa	Known RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	NLRP14	Q86W24	1093 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	NAXD	Q8IW45	347 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	RHBDD1	Q8TEB9	315 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	FNIP1	Q8TF40	1166 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	HMCES	Q96FZ2	354 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	CELF6	Q96J87	481 aa	Known RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	EIF3C	Q99613	913 aa	Known RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	TRIM7	Q9C029	511 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	TRIM5	Q9C035	493 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	THAP2	Q9H0W7	228 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	ISCU	Q9H1K1	167 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	PREB	Q9HCU5	417 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	GDF3	Q9NR23	364 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	DNAAF2	Q9NVR5	837 aa	Known RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	CTTNBP2NL	Q9P2B4	639 aa		11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	UBA2	Q9UBT2	640 aa	Predicted RBP	11.73	□□□□□ -0.53
CPNE1-222	ENST00000473373	IP6K2	Q9UHH9	426 aa		11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms