RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ARCN1P48444 511 aaKnown RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 PAPOLAP51003 745 aaKnown RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 YWHAHQ04917 246 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 BLMHQ13867 455 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 MAPRE1Q15691 268 aaKnown RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 CNGA3Q16281 694 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 SLC39A12Q504Y0 691 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 NOMO2Q5JPE7 1267 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 MFSD14CQ5VZR4 134 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 BEND5Q7L4P6 421 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 ZNF280BQ86YH2 543 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 CEP97Q8IW35 865 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 SCYL1Q96KG9 808 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 TRIM62Q9BVG3 475 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 WDR55Q9H6Y2 383 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 CYP4F11Q9HBI6 524 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 TRMT13Q9NUP7 481 aaKnown RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 PATJQ8NI35 1801 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 MYO16Q9Y6X6 1858 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 TMEM114B3SHH9 223 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 FGF10O15520 208 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 SEPT4O43236 478 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 MYL4P12829 197 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 ANPEPP15144 967 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 DNAJB2P25686 324 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 ADRA1AP35348 466 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 GRIA4P48058 902 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 GPR15P49685 360 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 FLT3LGP49771 235 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 EPHB1P54762 984 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 CACNB2Q08289 660 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 PCSK7Q16549 785 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 C6orf163Q5TEZ5 329 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 ZYG11AQ6WRX3 759 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 FRMD7Q6ZUT3 714 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 MYLK4Q86YV6 388 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 CENPLQ8N0S6 344 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 FSTL5Q8N475 847 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 LZTR1Q8N653 840 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 EFCAB3Q8N7B9 438 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 MICAL1Q8TDZ2 1067 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 MRGPRX2Q96LB1 330 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 TTC1Q99614 292 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 FSD1LQ9BXM9 530 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 ILKAPQ9H0C8 392 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 TRPV6Q9H1D0 765 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 NSMCE4AQ9NXX6 385 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 ABI2Q9NYB9 513 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 DONSONQ9NYP3 566 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 ZNF212Q9UDV6 495 aa9.07□□□□□ -0.96
SYNE1-217ENST00000466159 FNDC1Q4ZHG4 1894 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-217ENST00000466159 KCNU1A8MYU2 1149 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 NEMP1O14524 444 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 SKAP2O75563 359 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 PDE5AO76074 875 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 DDHD2O94830 711 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 UPP2O95045 317 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 HADHAP40939 763 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 SLC1A2P43004 574 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 NAGLUP54802 743 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 GEMP55040 296 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 SLC12A1Q13621 1099 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 DDR2Q16832 855 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 CMPK2Q5EBM0 449 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 ARL13AQ5H913 290 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 PIK3R6Q5UE93 754 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 LIPMQ5VYY2 423 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 RGMBQ6NW40 437 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 SAPCD2Q86UD0 394 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 ZNF598Q86UK7 904 aaKnown RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 CNTN4Q8IWV2 1026 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 KBTBD2Q8IY47 623 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 RTL3Q8N8U3 475 aaKnown RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 PNPLA1Q8N8W4 532 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 PPHLN1Q8NEY8 458 aaKnown RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 SREK1Q8WXA9 508 aaKnown RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 NXNL1Q96CM4 212 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 CMTM5Q96DZ9 223 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 OSBPL1AQ9BXW6 950 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 PPM1HQ9ULR3 514 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 ANKRD6Q9Y2G4 727 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 TCAF1Q9Y4C2 921 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 FAM95CA0A1B0GW59 222 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 MATN2O00339 956 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 AURKAO14965 403 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 SMNDC1O75940 238 aaKnown RBP eCLIP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 NEBLO76041 1014 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 PIGNO95427 931 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 BAG2O95816 211 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 TYMPP19971 482 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 ITGAXP20702 1163 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 CCND3P30281 292 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 MLLT6P55198 1093 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-217ENST00000466159 DLG1Q12959 904 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 KLF10Q13118 480 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 CUL3Q13618 768 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 SEPT6Q14141 434 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 AFMIDQ63HM1 303 aa9.06□□□□□ -0.96
SYNE1-217ENST00000466159 ZNF280DQ6N043 979 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms