RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 ZNF641Q96N77 438 aaPredicted RBP10.88□□□□□ -0.67
UBR4-208ENST00000459947 KCTD5Q9NXV2 234 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 GNSP15586 552 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 ITGB7P26010 798 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 HNRNPDQ14103 355 aaKnown RBP10.88□□□□□ -0.67
UBR4-208ENST00000459947 LYSMD4Q5XG99 296 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 SPOCD1Q6ZMY3 1216 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 OR52K2Q8NGK3 314 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 FAM131CQ96AQ9 280 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 PDLIM2Q96JY6 352 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 RPL10LQ96L21 214 aaKnown RBP10.88□□□□□ -0.67
UBR4-208ENST00000459947 TPSD1Q9BZJ3 242 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 KLC2Q9H0B6 622 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 PDFQ9HBH1 243 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 PPM1HQ9ULR3 514 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 ZDBF2Q9HCK1 2354 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 MEI4A8MW99 385 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 HRO43593 1189 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 TPMTP51580 245 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 NEK3P51956 506 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 Q6ZVU0 165 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 FAM129BQ96TA1 746 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 VPS45Q9NRW7 570 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 CYP8B1Q9UNU6 501 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 DMTF1Q9Y222 760 aa10.88□□□□□ -0.67
UBR4-208ENST00000459947 PRR23AA6NEV1 266 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 AP1G1O43747 822 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 MAGEC1O60732 1142 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 IL1BP01584 269 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 XRCC4Q13426 336 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 LBRQ14739 615 aaKnown RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 MYLK3Q32MK0 819 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 CFAP58Q5T655 872 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 CCDC50Q8IVM0 306 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 RYBPQ8N488 228 aaPredicted RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 LRRC45Q96CN5 670 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 PSKH2Q96QS6 385 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 VAT1Q99536 393 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 ATP13A3Q9H7F0 1226 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 FBXL12Q9NXK8 326 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 HECAQ9UBI9 543 aaPredicted RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 EVLQ9UI08 416 aaPredicted RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 CUL9Q8IWT3 2517 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 PALMO75781 387 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 SEMA4FO95754 770 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 SERPINA4P29622 427 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 CCNHP51946 323 aaPredicted RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 CCZ1BP86790 482 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 CCZ1P86791 482 aaPredicted RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 RPL6Q02878 288 aaKnown RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 ELP6Q0PNE2 266 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 SEL1L2Q5TEA6 688 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 NCBP2-AS2Q69YL0 99 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 CCDC13Q8IYE1 715 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 LRRC57Q8N9N7 239 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 OR2A12Q8NGT7 310 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 PCDH19Q8TAB3 1148 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 LAMA2P24043 3122 aaKnown RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 RNGTTO60942 597 aaKnown RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 SOCS5O75159 536 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 STK10O94804 968 aaKnown RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 TJP3O95049 919 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 XPAP23025 273 aaPredicted RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 GARSP41250 739 aaKnown RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 POLR2LP62875 67 aaKnown RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 DMWDQ09019 674 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 MARC1Q5VT66 337 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 BRAT1Q6PJG6 821 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 SRLQ86TD4 932 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 MMAAQ8IVH4 418 aaKnown RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 HDDC3Q8N4P3 179 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 SUMF1Q8NBK3 374 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 MKRN2Q9H000 416 aaKnown RBP10.87□□□□□ -0.67
UBR4-208ENST00000459947 C2orf42Q9NWW7 574 aa10.87□□□□□ -0.67
UBR4-208ENST00000459947 TCF4P15884 667 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 DNA2P51530 1060 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 TEAD4Q15561 434 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 ZNF805Q5CZA5 627 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 CCDC181Q5TID7 509 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 KIAA0895LQ68EN5 471 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 KIAA1161Q6NSJ0 714 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 BBS12Q6ZW61 710 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 ERN2Q76MJ5 926 aaKnown RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 PRPF39Q86UA1 669 aaKnown RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 FAM160A2Q8N612 972 aaPredicted RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 ASB12Q8WXK4 309 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 MAML1Q92585 1016 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 ZNF419Q96HQ0 510 aaPredicted RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 CELF6Q96J87 481 aaKnown RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 C1QTNF7Q9BXJ2 289 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 ZDHHC5Q9C0B5 715 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 MYO18AQ92614 2054 aaKnown RBP10.86□□□□□ -0.67
UBR4-208ENST00000459947 TSPAN11A1L157 253 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 MACROD2A1Z1Q3 448 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 GRID2IPA4D2P6 1211 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 CFAP69A5D8W1 941 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 MATN3O15232 486 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 CDKN2BP42772 138 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 MMP13P45452 471 aa10.86□□□□□ -0.67
UBR4-208ENST00000459947 DHPSP49366 369 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms