RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 KDELR1P24390 212 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 DRD3P35462 400 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 HADHBP55084 474 aaKnown RBP18.98■□□□□ 0.63
SHH-204ENST00000441114 GSDMDP57764 484 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 RHOAP61586 193 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 SNRPD1P62314 119 aaKnown RBP18.98■□□□□ 0.63
SHH-204ENST00000441114 CNTN1Q12860 1018 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 CYTH1Q15438 398 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 ODF2Q5BJF6 829 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 SYCP2LQ5T4T6 812 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 RHOT1Q8IXI2 618 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 OR14C36Q8NHC7 312 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 FOXJ1Q92949 421 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 ISG20Q96AZ6 181 aaKnown RBP18.98■□□□□ 0.63
SHH-204ENST00000441114 MIR1-1HGQ9H1L0 117 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 PDFQ9HBH1 243 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 SGK2Q9HBY8 427 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 RCOR3Q9P2K3 495 aaPredicted RBP18.98■□□□□ 0.63
SHH-204ENST00000441114 SALL4Q9UJQ4 1053 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 ALG6Q9Y672 507 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.98■□□□□ 0.63
SHH-204ENST00000441114 DUSP10Q9Y6W6 482 aa18.98■□□□□ 0.63
SHH-204ENST00000441114 METTL12A8MUP2 240 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 PATE3B3GLJ2 98 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 LRP3O75074 770 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 FSBPO95073 299 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 KRT1P04264 644 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 VAV2P52735 878 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 CSRP2Q16527 193 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 INO80DQ53TQ3 878 aaPredicted RBP18.97■□□□□ 0.63
SHH-204ENST00000441114 TCEAL6Q6IPX3 200 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 SYT12Q8IV01 421 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 C12orf50Q8NA57 414 aaPredicted RBP18.97■□□□□ 0.63
SHH-204ENST00000441114 TMIEQ8NEW7 156 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 CADM4Q8NFZ8 388 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 OR2AP1Q8NGE2 309 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 PCDH19Q8TAB3 1148 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 CASKIN2Q8WXE0 1202 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 TCEAL3Q969E4 200 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 ARRDC3Q96B67 414 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 RNF25Q96BH1 459 aaPredicted RBP18.97■□□□□ 0.63
SHH-204ENST00000441114 EXOC2Q96KP1 924 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 ZNF670Q9BS34 389 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 LACRTQ9GZZ8 138 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 DYRK4Q9NR20 520 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 VPS45Q9NRW7 570 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 EVLQ9UI08 416 aaPredicted RBP18.97■□□□□ 0.63
SHH-204ENST00000441114 IPO11Q9UI26 975 aaKnown RBP18.97■□□□□ 0.63
SHH-204ENST00000441114 FZD4Q9ULV1 537 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 WASF2Q9Y6W5 498 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 GPR179Q6PRD1 2367 aa18.97■□□□□ 0.63
SHH-204ENST00000441114 OTOGLQ3ZCN5 2332 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 ADAMTS9Q9P2N4 1935 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 PALMO75781 387 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 MAP3K6O95382 1288 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 IGSF6O95976 241 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 GSRP00390 522 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 ZNF806P0C7X5 589 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 SERPINB6P35237 376 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 IL10RBQ08334 325 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 MYLK3Q32MK0 819 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 WDR45BQ5MNZ6 344 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 PLA2G2CQ5R387 149 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 NCBP2-AS2Q69YL0 99 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 NCEH1Q6PIU2 408 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 PRR23CQ6ZRP0 262 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 DAAM2Q86T65 1068 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 GPR161Q8N6U8 529 aaKnown RBP18.96■□□□□ 0.63
SHH-204ENST00000441114 TPCN2Q8NHX9 752 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 GDAP1L1Q96MZ0 367 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 LHX3Q9UBR4 397 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 PILRBQ9UKJ0 227 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 DMDP11532 3685 aa18.96■□□□□ 0.63
SHH-204ENST00000441114 TBC1D3DA0A087WVF3 549 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 TBC1D3IA0A087WXS9 549 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 TBC1D3EA0A087X179 549 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 TBC1D3KA0A087X1G2 549 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 A0A0U1RQJ8 604 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 TBC1D3FA6NER0 549 aaPredicted RBP18.95■□□□□ 0.62
SHH-204ENST00000441114 LRRC72A6NJI9 287 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 TBC1D3LB9A6J9 549 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 MFSD11O43934 449 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 POP4O95707 220 aaKnown RBP18.95■□□□□ 0.62
SHH-204ENST00000441114 CFIP05156 583 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 TBC1D3HP0C7X1 549 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 ADPRHP54922 357 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 AASDHQ4L235 1098 aaPredicted RBP18.95■□□□□ 0.62
SHH-204ENST00000441114 KIAA0895LQ68EN5 471 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 TBC1D3GQ6DHY5 549 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 TBC1D3CQ6IPX1 549 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 TBC1D3Q8IZP1 549 aaPredicted RBP18.95■□□□□ 0.62
SHH-204ENST00000441114 ATPAF2Q8N5M1 289 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 BIRC7Q96CA5 298 aa18.95■□□□□ 0.62
SHH-204ENST00000441114 CINPQ9BW66 212 aaPredicted RBP18.95■□□□□ 0.62
SHH-204ENST00000441114 MAK16Q9BXY0 300 aaKnown RBP18.95■□□□□ 0.62
SHH-204ENST00000441114 DDX56Q9NY93 547 aaKnown RBP18.95■□□□□ 0.62
SHH-204ENST00000441114 EIF2B4Q9UI10 523 aaKnown RBP18.95■□□□□ 0.62
SHH-204ENST00000441114 KHNYNO15037 678 aaKnown RBP18.94■□□□□ 0.62
SHH-204ENST00000441114 INSIG1O15503 277 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 PJA2O43164 708 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms